Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC132938.5-201ENST00000624980 1813 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 AC132938.6-201ENST00000623828 1655 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
COL12A1Q99715 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.47■□□□□ 0.07
COL12A1Q99715 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.47■□□□□ 0.07
COL12A1Q99715 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.47■□□□□ 0.07
COL12A1Q99715 MIR6787-201ENST00000616675 61 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.47■□□□□ 0.07
COL12A1Q99715 SIRPAP1-201ENST00000448467 1770 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.47■□□□□ 0.07
COL12A1Q99715 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.47■□□□□ 0.07
COL12A1Q99715 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.47■□□□□ 0.07
COL12A1Q99715 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.46■□□□□ 0.07
COL12A1Q99715 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
COL12A1Q99715 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
COL12A1Q99715 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.46■□□□□ 0.07
COL12A1Q99715 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.46■□□□□ 0.07
COL12A1Q99715 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.46■□□□□ 0.07
COL12A1Q99715 AC023141.13-201ENST00000604991 943 ntBASIC15.46■□□□□ 0.07
COL12A1Q99715 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.46■□□□□ 0.07
COL12A1Q99715 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 BCYRN1-201ENST00000418539 200 ntBASIC15.46■□□□□ 0.07
COL12A1Q99715 SPTLC1P1-201ENST00000447199 261 ntBASIC15.46■□□□□ 0.07
COL12A1Q99715 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.46■□□□□ 0.07
COL12A1Q99715 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL12A1Q99715 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
COL12A1Q99715 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.46■□□□□ 0.06
COL12A1Q99715 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL12A1Q99715 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.46■□□□□ 0.06
COL12A1Q99715 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
COL12A1Q99715 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.46■□□□□ 0.06
COL12A1Q99715 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.46■□□□□ 0.06
COL12A1Q99715 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.45■□□□□ 0.06
COL12A1Q99715 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.45■□□□□ 0.06
COL12A1Q99715 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.45■□□□□ 0.06
COL12A1Q99715 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC15.45■□□□□ 0.06
COL12A1Q99715 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC15.45■□□□□ 0.06
COL12A1Q99715 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.45■□□□□ 0.06
COL12A1Q99715 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.45■□□□□ 0.06
COL12A1Q99715 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.45■□□□□ 0.06
COL12A1Q99715 AC068137.2-201ENST00000605408 478 ntBASIC15.45■□□□□ 0.06
COL12A1Q99715 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.45■□□□□ 0.06
COL12A1Q99715 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.45■□□□□ 0.06
COL12A1Q99715 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
COL12A1Q99715 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 AC069335.1-201ENST00000489972 472 ntBASIC15.45■□□□□ 0.06
COL12A1Q99715 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL12A1Q99715 AC017083.2-201ENST00000608069 979 ntBASIC15.45■□□□□ 0.06
COL12A1Q99715 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.45■□□□□ 0.06
COL12A1Q99715 AC068587.9-201ENST00000641814 219 ntBASIC15.45■□□□□ 0.06
COL12A1Q99715 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC15.44■□□□□ 0.06
COL12A1Q99715 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
COL12A1Q99715 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms