Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 LINC00167-201ENST00000530583 1419 ntBASIC19.27■□□□□ 0.68
CCDC42Q96M95 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 HLA-J-201ENST00000462773 1622 ntBASIC19.27■□□□□ 0.68
CCDC42Q96M95 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 TSPY14P-201ENST00000303979 915 ntBASIC19.27■□□□□ 0.68
CCDC42Q96M95 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 TSPY7P-201ENST00000431358 1114 ntBASIC19.27■□□□□ 0.68
CCDC42Q96M95 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 AC116407.2-201ENST00000613639 860 ntBASIC19.27■□□□□ 0.68
CCDC42Q96M95 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC42Q96M95 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
CCDC42Q96M95 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC42Q96M95 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.27■□□□□ 0.67
CCDC42Q96M95 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 AC084018.2-201ENST00000613093 2607 ntBASIC19.26■□□□□ 0.67
CCDC42Q96M95 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 MIR718-201ENST00000390190 70 ntBASIC19.26■□□□□ 0.67
CCDC42Q96M95 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC42Q96M95 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC42Q96M95 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 EGLN1P1-201ENST00000531623 762 ntBASIC19.25■□□□□ 0.67
CCDC42Q96M95 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.25■□□□□ 0.67
CCDC42Q96M95 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms