Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AL596275.1-201ENST00000423464 877 ntBASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AC008687.5-201ENST00000593746 558 ntBASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AL023973.1-201ENST00000624619 620 ntBASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AC141257.4-201ENST00000634557 245 ntBASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AC136944.6-201ENST00000634818 245 ntBASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AD000864.1-201ENST00000624076 2295 ntBASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 KRT8P47-201ENST00000604727 1398 ntBASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATG4AQ8WYN0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 AL138966.2-201ENST00000621997 464 ntBASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 AC079602.3-201ENST00000623931 403 ntBASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ATG4AQ8WYN0 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms