Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 WIZP1-201ENST00000531444 2299 ntBASIC17.34■□□□□ 0.37
LMX1AQ8TE12 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 AL022326.1-202ENST00000641533 845 ntBASIC17.34■□□□□ 0.37
LMX1AQ8TE12 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
LMX1AQ8TE12 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LMX1AQ8TE12 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.33■□□□□ 0.37
LMX1AQ8TE12 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.33■□□□□ 0.37
LMX1AQ8TE12 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.33■□□□□ 0.37
LMX1AQ8TE12 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LMX1AQ8TE12 AP002414.3-201ENST00000589352 1468 ntBASIC17.33■□□□□ 0.37
LMX1AQ8TE12 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 AC103564.2-201ENST00000432853 1299 ntBASIC17.33■□□□□ 0.36
LMX1AQ8TE12 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 RNA5SP415-201ENST00000517246 115 ntBASIC17.33■□□□□ 0.36
LMX1AQ8TE12 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 AC145285.3-201ENST00000564603 959 ntBASIC17.33■□□□□ 0.36
LMX1AQ8TE12 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 AC139530.3-201ENST00000620344 690 ntBASIC17.33■□□□□ 0.36
LMX1AQ8TE12 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 AC004817.3-201ENST00000602957 2129 ntBASIC17.33■□□□□ 0.36
LMX1AQ8TE12 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
LMX1AQ8TE12 SIRPAP1-201ENST00000448467 1770 ntBASIC17.33■□□□□ 0.36
LMX1AQ8TE12 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 COX5BP2-201ENST00000392354 334 ntBASIC17.32■□□□□ 0.36
LMX1AQ8TE12 LAGE3P1-201ENST00000425356 484 ntBASIC17.32■□□□□ 0.36
LMX1AQ8TE12 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 AC027601.4-201ENST00000611259 610 ntBASIC17.32■□□□□ 0.36
LMX1AQ8TE12 AD001527.2-201ENST00000622994 785 ntBASIC17.32■□□□□ 0.36
LMX1AQ8TE12 AC073592.5-201ENST00000624854 528 ntBASIC17.32■□□□□ 0.36
LMX1AQ8TE12 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1AQ8TE12 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms