Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 PVRIG2P-201ENST00000435460 978 ntBASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 AC141257.4-201ENST00000634557 245 ntBASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 AC136944.6-201ENST00000634818 245 ntBASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CLHC1Q8NHS4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CLHC1Q8NHS4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLHC1Q8NHS4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 AP000523.1-201ENST00000398242 1049 ntBASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 AC087499.1-201ENST00000418141 1075 ntBASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 PCDHA12-202ENST00000613593 2588 ntBASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLHC1Q8NHS4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms