Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.86■■□□□ 1.09
USP48Q86UV5 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC21.86■■□□□ 1.09
USP48Q86UV5 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.86■■□□□ 1.09
USP48Q86UV5 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.86■■□□□ 1.09
USP48Q86UV5 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.86■■□□□ 1.09
USP48Q86UV5 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.86■■□□□ 1.09
USP48Q86UV5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.86■■□□□ 1.09
USP48Q86UV5 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC21.86■■□□□ 1.09
USP48Q86UV5 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
USP48Q86UV5 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.86■■□□□ 1.09
USP48Q86UV5 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.86■■□□□ 1.09
USP48Q86UV5 AP000997.3-201ENST00000623333 2250 ntBASIC21.86■■□□□ 1.09
USP48Q86UV5 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.86■■□□□ 1.09
USP48Q86UV5 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.86■■□□□ 1.09
USP48Q86UV5 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
USP48Q86UV5 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
USP48Q86UV5 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
USP48Q86UV5 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
USP48Q86UV5 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.85■■□□□ 1.09
USP48Q86UV5 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
USP48Q86UV5 MED15P5-201ENST00000423150 992 ntBASIC21.85■■□□□ 1.09
USP48Q86UV5 AC112482.1-201ENST00000492080 688 ntBASIC21.85■■□□□ 1.09
USP48Q86UV5 NMU-202ENST00000505262 693 ntTSL 3 BASIC21.85■■□□□ 1.09
USP48Q86UV5 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.85■■□□□ 1.09
USP48Q86UV5 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC21.85■■□□□ 1.09
USP48Q86UV5 AP001269.4-201ENST00000609611 512 ntBASIC21.85■■□□□ 1.09
USP48Q86UV5 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
USP48Q86UV5 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USP48Q86UV5 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
USP48Q86UV5 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 TP73-AS1-210ENST00000637775 1455 ntBASIC21.84■■□□□ 1.09
USP48Q86UV5 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.84■■□□□ 1.09
USP48Q86UV5 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
USP48Q86UV5 RBM17P3-201ENST00000417687 1192 ntBASIC21.84■■□□□ 1.09
USP48Q86UV5 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC21.84■■□□□ 1.09
USP48Q86UV5 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21.84■■□□□ 1.09
USP48Q86UV5 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.84■■□□□ 1.09
USP48Q86UV5 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.84■■□□□ 1.09
USP48Q86UV5 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
USP48Q86UV5 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC21.84■■□□□ 1.09
USP48Q86UV5 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC21.84■■□□□ 1.09
USP48Q86UV5 FAM197Y3-203ENST00000618346 717 ntBASIC21.84■■□□□ 1.09
USP48Q86UV5 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.84■■□□□ 1.09
USP48Q86UV5 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.84■■□□□ 1.09
USP48Q86UV5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.84■■□□□ 1.09
USP48Q86UV5 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.84■■□□□ 1.09
USP48Q86UV5 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
USP48Q86UV5 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
USP48Q86UV5 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.83■■□□□ 1.09
USP48Q86UV5 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
USP48Q86UV5 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
USP48Q86UV5 AC073592.3-201ENST00000625118 1834 ntBASIC21.83■■□□□ 1.09
USP48Q86UV5 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
USP48Q86UV5 GPX1P2-201ENST00000429271 606 ntBASIC21.83■■□□□ 1.09
USP48Q86UV5 DHDH-204ENST00000523250 634 ntTSL 5 BASIC21.83■■□□□ 1.09
USP48Q86UV5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.83■■□□□ 1.09
USP48Q86UV5 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.83■■□□□ 1.09
USP48Q86UV5 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
USP48Q86UV5 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.83■■□□□ 1.09
USP48Q86UV5 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC21.83■■□□□ 1.09
USP48Q86UV5 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.83■■□□□ 1.08
USP48Q86UV5 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
USP48Q86UV5 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
USP48Q86UV5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms