Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 HEIH-201ENST00000623091 1652 ntBASIC11.13□□□□□ -0.63
LINC00643Q86TS7 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AL122018.1-201ENST00000446607 2310 ntBASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
LINC00643Q86TS7 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AC079328.2-201ENST00000561241 3354 ntBASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AL137784.3-201ENST00000623858 2288 ntBASIC11.11□□□□□ -0.63
LINC00643Q86TS7 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AC060834.1-201ENST00000443027 2032 ntBASIC11.11□□□□□ -0.63
LINC00643Q86TS7 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 YBX1P1-201ENST00000445822 960 ntBASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CEP120-209ENST00000515110 606 ntTSL 3 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AL356652.1-201ENST00000615962 565 ntBASIC11.11□□□□□ -0.63
LINC00643Q86TS7 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AC022532.1-201ENST00000624563 1728 ntBASIC11.11□□□□□ -0.63
LINC00643Q86TS7 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms