Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 COPE-202ENST00000349893 948 ntTSL 2 BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AC093010.1-201ENST00000473625 1624 ntBASIC24.05■■□□□ 1.44
NPHP3Q7Z494 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AQP6-203ENST00000551733 849 ntTSL 3 BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AC018445.3-201ENST00000624177 1945 ntBASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AF228730.6-201ENST00000641497 218 ntBASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AC084121.3-201ENST00000641716 218 ntBASIC24.05■■□□□ 1.44
NPHP3Q7Z494 AC105233.6-201ENST00000642093 218 ntBASIC24.05■■□□□ 1.44
NPHP3Q7Z494 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 DUTP2-201ENST00000519164 463 ntBASIC24.04■■□□□ 1.44
NPHP3Q7Z494 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 PUDP-206ENST00000540122 825 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 MED16-214ENST00000617672 554 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP3Q7Z494 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 PMS2P4-201ENST00000412466 1052 ntBASIC24.03■■□□□ 1.44
NPHP3Q7Z494 ADH5P3-201ENST00000433842 1137 ntBASIC24.03■■□□□ 1.44
NPHP3Q7Z494 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 SLBP-205ENST00000488267 987 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 RNA5SP421-201ENST00000516864 134 ntBASIC24.03■■□□□ 1.44
NPHP3Q7Z494 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 RBM7-207ENST00000544582 692 ntTSL 3 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 AL035252.4-201ENST00000624174 288 ntBASIC24.03■■□□□ 1.44
NPHP3Q7Z494 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC24.03■■□□□ 1.44
NPHP3Q7Z494 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 AC067863.1-201ENST00000494933 530 ntBASIC24.02■■□□□ 1.44
NPHP3Q7Z494 CXCL1P1-201ENST00000502804 216 ntBASIC24.02■■□□□ 1.44
NPHP3Q7Z494 AC093520.2-201ENST00000561830 333 ntBASIC24.02■■□□□ 1.44
NPHP3Q7Z494 AC009093.7-201ENST00000623853 1223 ntBASIC24.02■■□□□ 1.44
NPHP3Q7Z494 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP3Q7Z494 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 AC005034.1-201ENST00000426657 489 ntBASIC24.01■■□□□ 1.43
NPHP3Q7Z494 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC24.01■■□□□ 1.43
NPHP3Q7Z494 STK25P1-201ENST00000585406 838 ntBASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms