Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHFQ7M4L6 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHFQ7M4L6 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHFQ7M4L6 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.16■□□□□ 0.18
SHFQ7M4L6 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHFQ7M4L6 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
SHFQ7M4L6 OR6D1P-203ENST00000641209 4860 ntBASIC16.16■□□□□ 0.18
SHFQ7M4L6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHFQ7M4L6 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 MIR4785-201ENST00000585005 73 ntBASIC16.15■□□□□ 0.18
SHFQ7M4L6 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 Z99916.2-201ENST00000604037 246 ntBASIC16.15■□□□□ 0.18
SHFQ7M4L6 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 CR769767.2-201ENST00000622735 460 ntBASIC16.15■□□□□ 0.18
SHFQ7M4L6 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AC116562.4-202ENST00000641738 218 ntBASIC16.15■□□□□ 0.18
SHFQ7M4L6 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
SHFQ7M4L6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHFQ7M4L6 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SHFQ7M4L6 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 UBALD1-205ENST00000590891 2641 ntBASIC16.14■□□□□ 0.17
SHFQ7M4L6 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 RBM17P1-201ENST00000453646 1190 ntBASIC16.14■□□□□ 0.17
SHFQ7M4L6 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHFQ7M4L6 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHFQ7M4L6 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms