Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF20Q5VTR2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 DDX43P3-201ENST00000441064 443 ntBASIC21.33■■□□□ 1.01
RNF20Q5VTR2 SPDYE13P-201ENST00000445314 798 ntBASIC21.33■■□□□ 1.01
RNF20Q5VTR2 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
RNF20Q5VTR2 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.33■■□□□ 1
RNF20Q5VTR2 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNF20Q5VTR2 KRT8P47-201ENST00000604727 1398 ntBASIC21.33■■□□□ 1
RNF20Q5VTR2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNF20Q5VTR2 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
RNF20Q5VTR2 Z83836.1-201ENST00000624605 1642 ntBASIC21.33■■□□□ 1
RNF20Q5VTR2 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.32■■□□□ 1
RNF20Q5VTR2 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.32■■□□□ 1
RNF20Q5VTR2 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.32■■□□□ 1
RNF20Q5VTR2 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.32■■□□□ 1
RNF20Q5VTR2 AC009949.1-201ENST00000623048 1830 ntBASIC21.32■■□□□ 1
RNF20Q5VTR2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RNF20Q5VTR2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.32■■□□□ 1
RNF20Q5VTR2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.32■■□□□ 1
RNF20Q5VTR2 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.32■■□□□ 1
RNF20Q5VTR2 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.32■■□□□ 1
RNF20Q5VTR2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 KRT18P21-201ENST00000515767 1272 ntBASIC21.32■■□□□ 1
RNF20Q5VTR2 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.32■■□□□ 1
RNF20Q5VTR2 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RNF20Q5VTR2 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF20Q5VTR2 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.31■■□□□ 1
RNF20Q5VTR2 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.31■■□□□ 1
RNF20Q5VTR2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RNF20Q5VTR2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.31■■□□□ 1
RNF20Q5VTR2 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 AL645929.1-201ENST00000420084 975 ntBASIC21.31■■□□□ 1
RNF20Q5VTR2 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.31■■□□□ 1
RNF20Q5VTR2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.31■■□□□ 1
RNF20Q5VTR2 RNF126P1-202ENST00000569893 925 ntBASIC21.31■■□□□ 1
RNF20Q5VTR2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
RNF20Q5VTR2 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.31■■□□□ 1
RNF20Q5VTR2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
RNF20Q5VTR2 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.31■■□□□ 1
RNF20Q5VTR2 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF20Q5VTR2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.3■■□□□ 1
RNF20Q5VTR2 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF20Q5VTR2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.3■■□□□ 1
RNF20Q5VTR2 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.3■■□□□ 1
RNF20Q5VTR2 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.3■■□□□ 1
RNF20Q5VTR2 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF20Q5VTR2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF20Q5VTR2 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.3■■□□□ 1
RNF20Q5VTR2 MTCL1P1-201ENST00000446207 792 ntBASIC21.3■■□□□ 1
RNF20Q5VTR2 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RNF20Q5VTR2 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF20Q5VTR2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.3■■□□□ 1
RNF20Q5VTR2 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.3■■□□□ 1
RNF20Q5VTR2 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.3■■□□□ 1
RNF20Q5VTR2 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF20Q5VTR2 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
RNF20Q5VTR2 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.3■■□□□ 1
RNF20Q5VTR2 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms