Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 BX276092.7-203ENST00000637198 1536 ntBASIC21.01■□□□□ 0.95
RHBDL3P58872 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 MED15P5-201ENST00000423150 992 ntBASIC21.01■□□□□ 0.95
RHBDL3P58872 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC21.01■□□□□ 0.95
RHBDL3P58872 NMU-202ENST00000505262 693 ntTSL 3 BASIC21.01■□□□□ 0.95
RHBDL3P58872 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 STK25P1-201ENST00000585406 838 ntBASIC21.01■□□□□ 0.95
RHBDL3P58872 AL139424.1-201ENST00000607572 797 ntBASIC21.01■□□□□ 0.95
RHBDL3P58872 CAND2-206ENST00000626378 333 ntTSL 5 BASIC21.01■□□□□ 0.95
RHBDL3P58872 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
RHBDL3P58872 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.01■□□□□ 0.95
RHBDL3P58872 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RHBDL3P58872 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RHBDL3P58872 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 KLF4P1-201ENST00000412782 1185 ntBASIC21■□□□□ 0.95
RHBDL3P58872 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
RHBDL3P58872 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21■□□□□ 0.95
RHBDL3P58872 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC21■□□□□ 0.95
RHBDL3P58872 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21■□□□□ 0.95
RHBDL3P58872 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC21■□□□□ 0.95
RHBDL3P58872 AC116407.2-201ENST00000613639 860 ntBASIC21■□□□□ 0.95
RHBDL3P58872 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC21■□□□□ 0.95
RHBDL3P58872 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21■□□□□ 0.95
RHBDL3P58872 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
RHBDL3P58872 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21■□□□□ 0.95
RHBDL3P58872 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21■□□□□ 0.95
RHBDL3P58872 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
RHBDL3P58872 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21■□□□□ 0.95
RHBDL3P58872 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RHBDL3P58872 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.99■□□□□ 0.95
RHBDL3P58872 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.99■□□□□ 0.95
RHBDL3P58872 AC003669.1-201ENST00000334569 611 ntBASIC20.99■□□□□ 0.95
RHBDL3P58872 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.99■□□□□ 0.95
RHBDL3P58872 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.99■□□□□ 0.95
RHBDL3P58872 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.99■□□□□ 0.95
RHBDL3P58872 AL591424.1-201ENST00000442569 1213 ntBASIC20.99■□□□□ 0.95
RHBDL3P58872 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.99■□□□□ 0.95
RHBDL3P58872 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.99■□□□□ 0.95
RHBDL3P58872 AC092865.5-201ENST00000545435 363 ntBASIC20.99■□□□□ 0.95
RHBDL3P58872 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.99■□□□□ 0.95
RHBDL3P58872 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.99■□□□□ 0.95
RHBDL3P58872 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RHBDL3P58872 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
RHBDL3P58872 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RHBDL3P58872 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
RHBDL3P58872 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RHBDL3P58872 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
RHBDL3P58872 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
RHBDL3P58872 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.98■□□□□ 0.95
RHBDL3P58872 AC006504.4-201ENST00000592118 1568 ntBASIC20.98■□□□□ 0.95
RHBDL3P58872 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RHBDL3P58872 ELK2BP-201ENST00000415014 1224 ntBASIC20.98■□□□□ 0.95
RHBDL3P58872 BX842568.4-201ENST00000421222 227 ntBASIC20.98■□□□□ 0.95
RHBDL3P58872 KRT18P3-201ENST00000451602 1288 ntBASIC20.98■□□□□ 0.95
RHBDL3P58872 AC136632.2-201ENST00000512891 861 ntBASIC20.98■□□□□ 0.95
RHBDL3P58872 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.98■□□□□ 0.95
RHBDL3P58872 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.98■□□□□ 0.95
RHBDL3P58872 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RHBDL3P58872 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.98■□□□□ 0.95
RHBDL3P58872 KRT18P55-202ENST00000578578 1546 ntBASIC20.98■□□□□ 0.95
RHBDL3P58872 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms