Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.33■□□□□ 0.2
RFC3P40938 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
RFC3P40938 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
RFC3P40938 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.33■□□□□ 0.2
RFC3P40938 PHGDH-209ENST00000641074 1780 ntBASIC16.33■□□□□ 0.2
RFC3P40938 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
RFC3P40938 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.33■□□□□ 0.2
RFC3P40938 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.33■□□□□ 0.2
RFC3P40938 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.32■□□□□ 0.2
RFC3P40938 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
RFC3P40938 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.32■□□□□ 0.2
RFC3P40938 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
RFC3P40938 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.32■□□□□ 0.2
RFC3P40938 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.32■□□□□ 0.2
RFC3P40938 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.32■□□□□ 0.2
RFC3P40938 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.32■□□□□ 0.2
RFC3P40938 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.32■□□□□ 0.2
RFC3P40938 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.32■□□□□ 0.2
RFC3P40938 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.32■□□□□ 0.2
RFC3P40938 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.32■□□□□ 0.2
RFC3P40938 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.32■□□□□ 0.2
RFC3P40938 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 AL138831.2-201ENST00000606564 490 ntBASIC16.32■□□□□ 0.2
RFC3P40938 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.32■□□□□ 0.2
RFC3P40938 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.32■□□□□ 0.2
RFC3P40938 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
RFC3P40938 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.32■□□□□ 0.2
RFC3P40938 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC3P40938 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
RFC3P40938 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.31■□□□□ 0.2
RFC3P40938 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.31■□□□□ 0.2
RFC3P40938 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.31■□□□□ 0.2
RFC3P40938 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
RFC3P40938 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 AC008608.2-201ENST00000606089 416 ntBASIC16.31■□□□□ 0.2
RFC3P40938 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.31■□□□□ 0.2
RFC3P40938 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.31■□□□□ 0.2
RFC3P40938 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RFC3P40938 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
RFC3P40938 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC3P40938 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.3■□□□□ 0.2
RFC3P40938 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms