Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
HMGB1P09429 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGB1P09429 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.05■□□□□ 0.96
HMGB1P09429 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
HMGB1P09429 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGB1P09429 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
HMGB1P09429 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
HMGB1P09429 HLA-J-201ENST00000462773 1622 ntBASIC21.05■□□□□ 0.96
HMGB1P09429 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
HMGB1P09429 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGB1P09429 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGB1P09429 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGB1P09429 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB1P09429 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.05■□□□□ 0.96
HMGB1P09429 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 AC005332.1-201ENST00000577698 1310 ntBASIC21.04■□□□□ 0.96
HMGB1P09429 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
HMGB1P09429 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.04■□□□□ 0.96
HMGB1P09429 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
HMGB1P09429 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
HMGB1P09429 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.04■□□□□ 0.96
HMGB1P09429 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.04■□□□□ 0.96
HMGB1P09429 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.04■□□□□ 0.96
HMGB1P09429 FAM86EP-206ENST00000510506 987 ntBASIC21.04■□□□□ 0.96
HMGB1P09429 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 AL353801.3-201ENST00000609898 542 ntBASIC21.04■□□□□ 0.96
HMGB1P09429 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.04■□□□□ 0.96
HMGB1P09429 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
HMGB1P09429 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
HMGB1P09429 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
HMGB1P09429 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HMGB1P09429 REXO1L11P-201ENST00000620964 1927 ntBASIC21.04■□□□□ 0.96
HMGB1P09429 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB1P09429 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.03■□□□□ 0.96
HMGB1P09429 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HMGB1P09429 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
HMGB1P09429 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.03■□□□□ 0.96
HMGB1P09429 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.03■□□□□ 0.96
HMGB1P09429 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.03■□□□□ 0.96
HMGB1P09429 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
HMGB1P09429 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
HMGB1P09429 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.03■□□□□ 0.96
HMGB1P09429 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.03■□□□□ 0.96
HMGB1P09429 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB1P09429 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HMGB1P09429 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
HMGB1P09429 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.02■□□□□ 0.96
HMGB1P09429 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.02■□□□□ 0.96
HMGB1P09429 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 AL592071.1-201ENST00000611956 408 ntBASIC21.02■□□□□ 0.96
HMGB1P09429 IGHV3-41-201ENST00000613121 348 ntBASIC21.02■□□□□ 0.96
HMGB1P09429 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms