Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.4■□□□□ 0.38
TNFP01375 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.4■□□□□ 0.38
TNFP01375 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.4■□□□□ 0.38
TNFP01375 AC139887.3-201ENST00000568585 713 ntBASIC17.4■□□□□ 0.38
TNFP01375 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TNFP01375 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TNFP01375 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TNFP01375 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.39■□□□□ 0.38
TNFP01375 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TNFP01375 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.39■□□□□ 0.38
TNFP01375 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
TNFP01375 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.39■□□□□ 0.38
TNFP01375 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
TNFP01375 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
TNFP01375 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 RPS2P1-201ENST00000434010 821 ntBASIC17.39■□□□□ 0.37
TNFP01375 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.39■□□□□ 0.37
TNFP01375 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.39■□□□□ 0.37
TNFP01375 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.39■□□□□ 0.37
TNFP01375 OR7E14P-202ENST00000530490 1290 ntBASIC17.39■□□□□ 0.37
TNFP01375 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
TNFP01375 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.39■□□□□ 0.37
TNFP01375 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.39■□□□□ 0.37
TNFP01375 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.39■□□□□ 0.37
TNFP01375 AD001527.2-201ENST00000622994 785 ntBASIC17.39■□□□□ 0.37
TNFP01375 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.39■□□□□ 0.37
TNFP01375 AF228730.7-201ENST00000641842 219 ntBASIC17.39■□□□□ 0.37
TNFP01375 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TNFP01375 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TNFP01375 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TNFP01375 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
TNFP01375 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TNFP01375 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TNFP01375 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 AC090164.3-201ENST00000610780 2143 ntBASIC17.38■□□□□ 0.37
TNFP01375 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 PMPCAP1-201ENST00000508114 1576 ntBASIC17.38■□□□□ 0.37
TNFP01375 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.38■□□□□ 0.37
TNFP01375 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.38■□□□□ 0.37
TNFP01375 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TNFP01375 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.38■□□□□ 0.37
TNFP01375 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.38■□□□□ 0.37
TNFP01375 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TNFP01375 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.38■□□□□ 0.37
TNFP01375 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 MTDHP4-201ENST00000600287 670 ntBASIC17.38■□□□□ 0.37
TNFP01375 AL049840.3-201ENST00000602669 611 ntBASIC17.38■□□□□ 0.37
TNFP01375 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.38■□□□□ 0.37
TNFP01375 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms