Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS4BO75351 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS4BO75351 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS4BO75351 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS4BO75351 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.4
VPS4BO75351 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS4BO75351 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS4BO75351 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.52■□□□□ 0.4
VPS4BO75351 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.52■□□□□ 0.4
VPS4BO75351 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS4BO75351 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
VPS4BO75351 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS4BO75351 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS4BO75351 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
VPS4BO75351 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS4BO75351 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS4BO75351 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VPS4BO75351 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS4BO75351 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS4BO75351 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
VPS4BO75351 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS4BO75351 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS4BO75351 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VPS4BO75351 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 AP000523.1-201ENST00000398242 1049 ntBASIC17.51■□□□□ 0.39
VPS4BO75351 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.51■□□□□ 0.39
VPS4BO75351 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS4BO75351 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS4BO75351 AC104390.1-201ENST00000555663 520 ntBASIC17.51■□□□□ 0.39
VPS4BO75351 AL136038.3-201ENST00000561909 1096 ntBASIC17.51■□□□□ 0.39
VPS4BO75351 AL441883.1-201ENST00000566170 1045 ntBASIC17.51■□□□□ 0.39
VPS4BO75351 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.51■□□□□ 0.39
VPS4BO75351 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.51■□□□□ 0.39
VPS4BO75351 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VPS4BO75351 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS4BO75351 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS4BO75351 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS4BO75351 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 AL024508.2-201ENST00000607749 1894 ntBASIC17.5■□□□□ 0.39
VPS4BO75351 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4BO75351 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.5■□□□□ 0.39
VPS4BO75351 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS4BO75351 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
VPS4BO75351 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
VPS4BO75351 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.5■□□□□ 0.39
VPS4BO75351 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS4BO75351 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS4BO75351 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS4BO75351 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 AL023803.3-201ENST00000615559 522 ntBASIC17.5■□□□□ 0.39
VPS4BO75351 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4BO75351 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS4BO75351 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 AL023806.1-201ENST00000603994 1649 ntBASIC17.5■□□□□ 0.39
VPS4BO75351 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4BO75351 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms