Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA3O43365 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA3O43365 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 HNRNPDP1-201ENST00000439535 754 ntBASIC14.34□□□□□ -0.11
HOXA3O43365 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.34□□□□□ -0.11
HOXA3O43365 KRT18P58-201ENST00000527480 1120 ntBASIC14.34□□□□□ -0.11
HOXA3O43365 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
HOXA3O43365 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC14.34□□□□□ -0.11
HOXA3O43365 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA3O43365 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HOXA3O43365 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HOXA3O43365 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA3O43365 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HOXA3O43365 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HOXA3O43365 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 ESPNP-201ENST00000270691 2015 ntBASIC14.33□□□□□ -0.12
HOXA3O43365 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA3O43365 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 MIR940-201ENST00000401276 94 ntBASIC14.33□□□□□ -0.12
HOXA3O43365 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.33□□□□□ -0.12
HOXA3O43365 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 RPL13AP23-201ENST00000480739 586 ntBASIC14.33□□□□□ -0.12
HOXA3O43365 SART3-203ENST00000546611 1184 ntBASIC14.33□□□□□ -0.12
HOXA3O43365 AC021087.4-201ENST00000563761 564 ntBASIC14.33□□□□□ -0.12
HOXA3O43365 AC106730.1-201ENST00000566722 1090 ntBASIC14.33□□□□□ -0.12
HOXA3O43365 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 AR-207ENST00000612010 3896 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA3O43365 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
HOXA3O43365 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA3O43365 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA3O43365 AL356309.3-201ENST00000624132 1934 ntBASIC14.33□□□□□ -0.12
HOXA3O43365 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA3O43365 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA3O43365 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA3O43365 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXA3O43365 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA3O43365 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 AC126763.1-201ENST00000552015 2118 ntBASIC14.32□□□□□ -0.12
HOXA3O43365 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 PKD1P1-201ENST00000458669 6805 ntBASIC14.32□□□□□ -0.12
HOXA3O43365 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA3O43365 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXA3O43365 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms