Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HOXC11O43248 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HOXC11O43248 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC11O43248 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC11O43248 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC11O43248 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC11O43248 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.11■□□□□ 0.49
HOXC11O43248 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC11O43248 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 NEFHP1-201ENST00000412845 2629 ntBASIC18.11■□□□□ 0.49
HOXC11O43248 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC11O43248 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC11O43248 AC116407.2-201ENST00000613639 860 ntBASIC18.11■□□□□ 0.49
HOXC11O43248 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
HOXC11O43248 AL049757.1-201ENST00000616842 1596 ntBASIC18.11■□□□□ 0.49
HOXC11O43248 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC11O43248 TNXA-203ENST00000507684 2038 ntBASIC18.11■□□□□ 0.49
HOXC11O43248 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.11■□□□□ 0.49
HOXC11O43248 AC135776.1-201ENST00000319817 2481 ntBASIC18.11■□□□□ 0.49
HOXC11O43248 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC11O43248 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXC11O43248 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXC11O43248 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 AL138781.2-201ENST00000617896 1843 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 PMS2P7-201ENST00000506558 1336 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.1■□□□□ 0.49
HOXC11O43248 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 RNA5SP415-201ENST00000517246 115 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 AC034105.1-201ENST00000563488 319 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.1■□□□□ 0.49
HOXC11O43248 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 TERC-201ENST00000602385 541 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.1■□□□□ 0.49
HOXC11O43248 Z83851.2-201ENST00000609564 659 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXC11O43248 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXC11O43248 LTB4R2-202ENST00000528054 3092 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXC11O43248 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 AC093503.3-201ENST00000624917 2352 ntBASIC18.1■□□□□ 0.49
HOXC11O43248 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC11O43248 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC11O43248 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC11O43248 SIRPAP1-201ENST00000448467 1770 ntBASIC18.09■□□□□ 0.49
HOXC11O43248 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 AP002414.3-201ENST00000589352 1468 ntBASIC18.09■□□□□ 0.49
HOXC11O43248 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HOXC11O43248 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC11O43248 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.09■□□□□ 0.49
HOXC11O43248 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.09■□□□□ 0.49
HOXC11O43248 KRT18P27-201ENST00000427733 1299 ntBASIC18.09■□□□□ 0.49
HOXC11O43248 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 AC006557.2-201ENST00000592985 1240 ntBASIC18.09■□□□□ 0.49
HOXC11O43248 AC027601.4-201ENST00000611259 610 ntBASIC18.09■□□□□ 0.49
HOXC11O43248 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC11O43248 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC11O43248 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HOXC11O43248 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.09■□□□□ 0.49
HOXC11O43248 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC11O43248 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.09■□□□□ 0.49
HOXC11O43248 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC11O43248 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.09■□□□□ 0.49
HOXC11O43248 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC11O43248 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HOXC11O43248 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.49
HOXC11O43248 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
HOXC11O43248 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HOXC11O43248 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HOXC11O43248 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HOXC11O43248 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HOXC11O43248 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HOXC11O43248 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.08■□□□□ 0.49
HOXC11O43248 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HOXC11O43248 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms