Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CACNA1AO00555 AL353593.2-201ENST00000602529 1483 ntBASIC16.62■□□□□ 0.25
CACNA1AO00555 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.62■□□□□ 0.25
CACNA1AO00555 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.62■□□□□ 0.25
CACNA1AO00555 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.62■□□□□ 0.25
CACNA1AO00555 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.62■□□□□ 0.25
CACNA1AO00555 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.62■□□□□ 0.25
CACNA1AO00555 LDHBP1-201ENST00000455730 1119 ntBASIC16.62■□□□□ 0.25
CACNA1AO00555 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CACNA1AO00555 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.62■□□□□ 0.25
CACNA1AO00555 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CACNA1AO00555 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CACNA1AO00555 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CACNA1AO00555 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CACNA1AO00555 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 AL512408.1-201ENST00000569378 2000 ntBASIC16.62■□□□□ 0.25
CACNA1AO00555 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CACNA1AO00555 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CACNA1AO00555 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.61■□□□□ 0.25
CACNA1AO00555 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.61■□□□□ 0.25
CACNA1AO00555 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.61■□□□□ 0.25
CACNA1AO00555 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
CACNA1AO00555 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.61■□□□□ 0.25
CACNA1AO00555 AL590560.3-201ENST00000623350 461 ntBASIC16.61■□□□□ 0.25
CACNA1AO00555 AC148477.9-201ENST00000623974 539 ntBASIC16.61■□□□□ 0.25
CACNA1AO00555 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.61■□□□□ 0.25
CACNA1AO00555 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.61■□□□□ 0.25
CACNA1AO00555 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
CACNA1AO00555 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CACNA1AO00555 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.61■□□□□ 0.25
CACNA1AO00555 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.61■□□□□ 0.25
CACNA1AO00555 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 AP005482.1-201ENST00000563722 1273 ntBASIC16.61■□□□□ 0.25
CACNA1AO00555 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.61■□□□□ 0.25
CACNA1AO00555 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CACNA1AO00555 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.6■□□□□ 0.25
CACNA1AO00555 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CACNA1AO00555 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CACNA1AO00555 ANKRD19P-201ENST00000338192 862 ntBASIC16.6■□□□□ 0.25
CACNA1AO00555 MPRIPP1-201ENST00000452433 1089 ntBASIC16.6■□□□□ 0.25
CACNA1AO00555 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.6■□□□□ 0.25
CACNA1AO00555 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.6■□□□□ 0.25
CACNA1AO00555 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.6■□□□□ 0.25
CACNA1AO00555 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CACNA1AO00555 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.6■□□□□ 0.25
CACNA1AO00555 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CACNA1AO00555 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.6■□□□□ 0.25
CACNA1AO00555 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.6■□□□□ 0.25
CACNA1AO00555 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
CACNA1AO00555 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.6■□□□□ 0.25
CACNA1AO00555 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.6■□□□□ 0.25
CACNA1AO00555 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CACNA1AO00555 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CACNA1AO00555 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CACNA1AO00555 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.59■□□□□ 0.25
CACNA1AO00555 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 AL512343.1-201ENST00000605837 169 ntBASIC16.59■□□□□ 0.25
CACNA1AO00555 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.59■□□□□ 0.25
CACNA1AO00555 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 UXT-AS1-201ENST00000590504 1525 ntBASIC16.59■□□□□ 0.25
CACNA1AO00555 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 AL049757.1-201ENST00000616842 1596 ntBASIC16.59■□□□□ 0.25
CACNA1AO00555 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CACNA1AO00555 PTCHD3P3-201ENST00000403073 906 ntBASIC16.59■□□□□ 0.25
CACNA1AO00555 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CACNA1AO00555 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.59■□□□□ 0.25
CACNA1AO00555 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms