Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNTN3Q9P232 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CNTN3Q9P232 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNTN3Q9P232 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.21■□□□□ 0.67
CNTN3Q9P232 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
CNTN3Q9P232 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CNTN3Q9P232 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CNTN3Q9P232 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CNTN3Q9P232 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 AP005117.1-201ENST00000584346 1413 ntBASIC19.2■□□□□ 0.66
CNTN3Q9P232 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 SLC25A6P4-201ENST00000586535 553 ntBASIC19.2■□□□□ 0.66
CNTN3Q9P232 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CNTN3Q9P232 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.2■□□□□ 0.66
CNTN3Q9P232 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 AC116407.2-201ENST00000613639 860 ntBASIC19.19■□□□□ 0.66
CNTN3Q9P232 AP000867.4-201ENST00000641616 219 ntBASIC19.19■□□□□ 0.66
CNTN3Q9P232 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 ABALON-201ENST00000629058 1903 ntBASIC19.19■□□□□ 0.66
CNTN3Q9P232 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CNTN3Q9P232 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.19■□□□□ 0.66
CNTN3Q9P232 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 MTDHP3-201ENST00000594186 672 ntBASIC19.18■□□□□ 0.66
CNTN3Q9P232 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 KRT18P55-202ENST00000578578 1546 ntBASIC19.18■□□□□ 0.66
CNTN3Q9P232 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CNTN3Q9P232 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.18■□□□□ 0.66
CNTN3Q9P232 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CNTN3Q9P232 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms