Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 NSUN5P1-202ENST00000421140 1535 ntBASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 NSUN5P2-203ENST00000457352 1529 ntBASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.71■□□□□ 0.43
TRIM39Q9HCM9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
TRIM39Q9HCM9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TRIM39Q9HCM9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 MINOS1P3-201ENST00000457048 203 ntBASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 PRELID1P1-202ENST00000567272 903 ntBASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AC005336.2-201ENST00000593183 939 ntBASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AC135050.7-201ENST00000624508 2218 ntBASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 AC018470.1-201ENST00000624790 3129 ntBASIC17.7■□□□□ 0.42
TRIM39Q9HCM9 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms