Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 AC009949.1-201ENST00000623048 1830 ntBASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 FAM58CP-201ENST00000435741 640 ntBASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 RNF34-208ENST00000555076 593 ntTSL 3 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SHANK3Q9BYB0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC22.95■■□□□ 1.27
SHANK3Q9BYB0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.27
SHANK3Q9BYB0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
SHANK3Q9BYB0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 CEND1P1-201ENST00000451006 455 ntBASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 AC106028.4-201ENST00000614509 607 ntBASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC22.95■■□□□ 1.26
SHANK3Q9BYB0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 PUDP-206ENST00000540122 825 ntTSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC22.94■■□□□ 1.26
SHANK3Q9BYB0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 BX276092.7-203ENST00000637198 1536 ntBASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 AL590787.1-201ENST00000568856 1315 ntBASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
SHANK3Q9BYB0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 SIGLEC30P-201ENST00000455569 941 ntBASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 AC022145.2-201ENST00000598203 171 ntBASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 AC093512.1-201ENST00000617969 520 ntBASIC22.92■■□□□ 1.26
SHANK3Q9BYB0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms