Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NUP88Q99567 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.9■□□□□ 0.94
NUP88Q99567 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.9■□□□□ 0.94
NUP88Q99567 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 AC148477.8-201ENST00000624298 468 ntBASIC20.9■□□□□ 0.94
NUP88Q99567 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.9■□□□□ 0.94
NUP88Q99567 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.9■□□□□ 0.94
NUP88Q99567 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.9■□□□□ 0.94
NUP88Q99567 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.9■□□□□ 0.94
NUP88Q99567 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 AC073592.3-201ENST00000625118 1834 ntBASIC20.9■□□□□ 0.94
NUP88Q99567 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NUP88Q99567 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
NUP88Q99567 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
NUP88Q99567 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NUP88Q99567 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NUP88Q99567 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NUP88Q99567 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.89■□□□□ 0.94
NUP88Q99567 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.89■□□□□ 0.94
NUP88Q99567 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NUP88Q99567 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
NUP88Q99567 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
NUP88Q99567 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.89■□□□□ 0.93
NUP88Q99567 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.89■□□□□ 0.93
NUP88Q99567 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.89■□□□□ 0.93
NUP88Q99567 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.89■□□□□ 0.93
NUP88Q99567 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NUP88Q99567 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.89■□□□□ 0.93
NUP88Q99567 AC008608.2-201ENST00000606089 416 ntBASIC20.89■□□□□ 0.93
NUP88Q99567 AP001269.4-201ENST00000609611 512 ntBASIC20.89■□□□□ 0.93
NUP88Q99567 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NUP88Q99567 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
NUP88Q99567 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.89■□□□□ 0.93
NUP88Q99567 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.89■□□□□ 0.93
NUP88Q99567 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.89■□□□□ 0.93
NUP88Q99567 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NUP88Q99567 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NUP88Q99567 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.88■□□□□ 0.93
NUP88Q99567 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.88■□□□□ 0.93
NUP88Q99567 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 INTS4P1-201ENST00000438455 1935 ntBASIC20.88■□□□□ 0.93
NUP88Q99567 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
NUP88Q99567 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.88■□□□□ 0.93
NUP88Q99567 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 AC026471.1-201ENST00000564629 3026 ntBASIC20.88■□□□□ 0.93
NUP88Q99567 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.88■□□□□ 0.93
NUP88Q99567 AC009533.2-201ENST00000543664 586 ntBASIC20.88■□□□□ 0.93
NUP88Q99567 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NUP88Q99567 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.88■□□□□ 0.93
NUP88Q99567 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.88■□□□□ 0.93
NUP88Q99567 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NUP88Q99567 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NUP88Q99567 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NUP88Q99567 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NUP88Q99567 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NUP88Q99567 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.87■□□□□ 0.93
NUP88Q99567 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.87■□□□□ 0.93
NUP88Q99567 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.87■□□□□ 0.93
NUP88Q99567 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.87■□□□□ 0.93
NUP88Q99567 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.87■□□□□ 0.93
NUP88Q99567 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NUP88Q99567 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.87■□□□□ 0.93
NUP88Q99567 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.87■□□□□ 0.93
NUP88Q99567 FAM197Y8-203ENST00000450145 560 ntBASIC20.87■□□□□ 0.93
NUP88Q99567 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.87■□□□□ 0.93
NUP88Q99567 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
NUP88Q99567 AC011467.2-201ENST00000598425 242 ntBASIC20.87■□□□□ 0.93
NUP88Q99567 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NUP88Q99567 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.87■□□□□ 0.93
NUP88Q99567 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
NUP88Q99567 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
NUP88Q99567 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
NUP88Q99567 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms