Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC42Q96M95 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC42Q96M95 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 AC022211.2-201ENST00000585075 2527 ntBASIC19.31■□□□□ 0.68
CCDC42Q96M95 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC42Q96M95 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 OR6D1P-203ENST00000641209 4860 ntBASIC19.3■□□□□ 0.68
CCDC42Q96M95 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 SEC1P-202ENST00000473944 940 ntBASIC19.3■□□□□ 0.68
CCDC42Q96M95 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 MIR4785-201ENST00000585005 73 ntBASIC19.3■□□□□ 0.68
CCDC42Q96M95 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
CCDC42Q96M95 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC42Q96M95 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 MIR1238-201ENST00000408483 83 ntBASIC19.29■□□□□ 0.68
CCDC42Q96M95 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 AC024243.1-201ENST00000609234 778 ntBASIC19.29■□□□□ 0.68
CCDC42Q96M95 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC42Q96M95 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC42Q96M95 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 LINC00304-203ENST00000565008 1864 ntBASIC19.28■□□□□ 0.68
CCDC42Q96M95 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC42Q96M95 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC42Q96M95 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC42Q96M95 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms