Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 AL845331.1-201ENST00000424978 1190 ntBASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 RN7SL606P-201ENST00000472779 293 ntBASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 TSPY19P-201ENST00000418461 509 ntBASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 TSPY18P-201ENST00000441642 509 ntBASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 MINOS1P3-201ENST00000457048 203 ntBASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP3Q96DZ5 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 TSPY12P-201ENST00000421279 868 ntBASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 AC113404.2-201ENST00000507884 177 ntBASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 UNC93B7-201ENST00000509439 705 ntBASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 AC126763.1-201ENST00000552015 2118 ntBASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP3Q96DZ5 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms