Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 AC100757.3-201ENST00000622361 1406 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 AC073314.1-201ENST00000568729 2216 ntBASIC17.97■□□□□ 0.47
TTC28Q96AY4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
TTC28Q96AY4 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.97■□□□□ 0.47
TTC28Q96AY4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TTC28Q96AY4 AC079140.1-201ENST00000508039 487 ntBASIC17.97■□□□□ 0.47
TTC28Q96AY4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
TTC28Q96AY4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 IGHV3-42-201ENST00000520410 361 ntBASIC17.97■□□□□ 0.47
TTC28Q96AY4 AL139099.5-201ENST00000635274 300 ntBASIC17.97■□□□□ 0.47
TTC28Q96AY4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.97■□□□□ 0.47
TTC28Q96AY4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TTC28Q96AY4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TTC28Q96AY4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 GGTLC5P-201ENST00000617623 998 ntBASIC17.96■□□□□ 0.47
TTC28Q96AY4 MIR6727-201ENST00000620702 65 ntBASIC17.96■□□□□ 0.47
TTC28Q96AY4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.96■□□□□ 0.47
TTC28Q96AY4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 AC104794.3-201ENST00000566840 1248 ntBASIC17.96■□□□□ 0.47
TTC28Q96AY4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
TTC28Q96AY4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TTC28Q96AY4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TTC28Q96AY4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 AP006294.1-201ENST00000415407 339 ntBASIC17.95■□□□□ 0.46
TTC28Q96AY4 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 AC069120.2-201ENST00000524091 540 ntBASIC17.95■□□□□ 0.46
TTC28Q96AY4 API5-211ENST00000534695 560 ntTSL 5 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 MIR4259-201ENST00000584466 101 ntBASIC17.95■□□□□ 0.46
TTC28Q96AY4 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TTC28Q96AY4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TTC28Q96AY4 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.94■□□□□ 0.46
TTC28Q96AY4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TTC28Q96AY4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TTC28Q96AY4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TTC28Q96AY4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TTC28Q96AY4 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.94■□□□□ 0.46
TTC28Q96AY4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TTC28Q96AY4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.94■□□□□ 0.46
TTC28Q96AY4 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.94■□□□□ 0.46
TTC28Q96AY4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TTC28Q96AY4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TTC28Q96AY4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.46
TTC28Q96AY4 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms