Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.2■□□□□ 0.98
CTR9Q6PD62 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.2■□□□□ 0.98
CTR9Q6PD62 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTR9Q6PD62 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTR9Q6PD62 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTR9Q6PD62 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.2■□□□□ 0.98
CTR9Q6PD62 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTR9Q6PD62 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
CTR9Q6PD62 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CTR9Q6PD62 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.2■□□□□ 0.98
CTR9Q6PD62 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 SAPCD2P3-201ENST00000455031 850 ntBASIC21.19■□□□□ 0.98
CTR9Q6PD62 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTR9Q6PD62 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CTR9Q6PD62 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 AIRN-201ENST00000601203 4374 ntBASIC21.18■□□□□ 0.98
CTR9Q6PD62 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTR9Q6PD62 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.18■□□□□ 0.98
CTR9Q6PD62 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 AL160237.2-201ENST00000556165 472 ntBASIC21.17■□□□□ 0.98
CTR9Q6PD62 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 AL121912.1-201ENST00000603683 238 ntBASIC21.17■□□□□ 0.98
CTR9Q6PD62 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CTR9Q6PD62 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTR9Q6PD62 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CTR9Q6PD62 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CTR9Q6PD62 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTR9Q6PD62 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTR9Q6PD62 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.16■□□□□ 0.98
CTR9Q6PD62 ABALON-201ENST00000629058 1903 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms