Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 UPK3BP1-201ENST00000428678 509 ntBASIC21.59■■□□□ 1.05
VPS53Q5VIR6 BX276092.5-203ENST00000456199 560 ntBASIC21.59■■□□□ 1.05
VPS53Q5VIR6 RN7SL606P-201ENST00000472779 293 ntBASIC21.59■■□□□ 1.05
VPS53Q5VIR6 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 TSSC2-201ENST00000450217 709 ntBASIC21.58■■□□□ 1.05
VPS53Q5VIR6 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 AL121672.3-201ENST00000608644 468 ntBASIC21.58■■□□□ 1.05
VPS53Q5VIR6 NPAP1P7-201ENST00000613027 823 ntBASIC21.58■■□□□ 1.05
VPS53Q5VIR6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS53Q5VIR6 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.58■■□□□ 1.04
VPS53Q5VIR6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 TSPY12P-201ENST00000421279 868 ntBASIC21.57■■□□□ 1.04
VPS53Q5VIR6 AC068472.1-201ENST00000474589 881 ntBASIC21.57■■□□□ 1.04
VPS53Q5VIR6 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 MIR3180-1-201ENST00000580374 94 ntBASIC21.57■■□□□ 1.04
VPS53Q5VIR6 MIR3180-3-201ENST00000584616 94 ntBASIC21.57■■□□□ 1.04
VPS53Q5VIR6 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 AL592071.1-201ENST00000611956 408 ntBASIC21.57■■□□□ 1.04
VPS53Q5VIR6 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.57■■□□□ 1.04
VPS53Q5VIR6 AC093458.2-201ENST00000623150 629 ntBASIC21.57■■□□□ 1.04
VPS53Q5VIR6 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS53Q5VIR6 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms