Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
VCPP55072 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VCPP55072 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.15■□□□□ 0.66
VCPP55072 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.14■□□□□ 0.66
VCPP55072 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.14■□□□□ 0.66
VCPP55072 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VCPP55072 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VCPP55072 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.14■□□□□ 0.66
VCPP55072 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
VCPP55072 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
VCPP55072 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.14■□□□□ 0.65
VCPP55072 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.14■□□□□ 0.65
VCPP55072 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.14■□□□□ 0.65
VCPP55072 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 PCDHB18P-201ENST00000524813 2368 ntBASIC19.14■□□□□ 0.65
VCPP55072 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCPP55072 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.14■□□□□ 0.65
VCPP55072 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
VCPP55072 AC008764.6-201ENST00000595909 2069 ntBASIC19.13■□□□□ 0.65
VCPP55072 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VCPP55072 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.13■□□□□ 0.65
VCPP55072 IGHV3-47-201ENST00000425060 335 ntBASIC19.13■□□□□ 0.65
VCPP55072 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.13■□□□□ 0.65
VCPP55072 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
VCPP55072 Z69720.1-201ENST00000601483 472 ntBASIC19.13■□□□□ 0.65
VCPP55072 IGHV3-41-201ENST00000613121 348 ntBASIC19.13■□□□□ 0.65
VCPP55072 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.13■□□□□ 0.65
VCPP55072 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.13■□□□□ 0.65
VCPP55072 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 ESPNP-201ENST00000270691 2015 ntBASIC19.13■□□□□ 0.65
VCPP55072 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.13■□□□□ 0.65
VCPP55072 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.13■□□□□ 0.65
VCPP55072 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCPP55072 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
VCPP55072 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.12■□□□□ 0.65
VCPP55072 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.12■□□□□ 0.65
VCPP55072 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.12■□□□□ 0.65
VCPP55072 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.12■□□□□ 0.65
VCPP55072 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.12■□□□□ 0.65
VCPP55072 AC090616.6-201ENST00000582640 721 ntBASIC19.12■□□□□ 0.65
VCPP55072 AC140113.2-201ENST00000604370 208 ntBASIC19.12■□□□□ 0.65
VCPP55072 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VCPP55072 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCPP55072 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.11■□□□□ 0.65
VCPP55072 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms