Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGCS2P54868 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGCS2P54868 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGCS2P54868 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGCS2P54868 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
HMGCS2P54868 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGCS2P54868 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGCS2P54868 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGCS2P54868 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGCS2P54868 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGCS2P54868 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.54■□□□□ 0.88
HMGCS2P54868 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.54■□□□□ 0.88
HMGCS2P54868 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.54■□□□□ 0.88
HMGCS2P54868 HMGN1P19-201ENST00000436976 333 ntBASIC20.54■□□□□ 0.88
HMGCS2P54868 DNAJB3-202ENST00000449667 1266 ntBASIC20.54■□□□□ 0.88
HMGCS2P54868 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.54■□□□□ 0.88
HMGCS2P54868 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HMGCS2P54868 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.54■□□□□ 0.88
HMGCS2P54868 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGCS2P54868 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGCS2P54868 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGCS2P54868 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HMGCS2P54868 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HMGCS2P54868 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.53■□□□□ 0.88
HMGCS2P54868 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.53■□□□□ 0.88
HMGCS2P54868 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.53■□□□□ 0.88
HMGCS2P54868 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.53■□□□□ 0.88
HMGCS2P54868 AC027796.2-201ENST00000575326 344 ntBASIC20.53■□□□□ 0.88
HMGCS2P54868 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 AL355385.1-201ENST00000606123 409 ntBASIC20.53■□□□□ 0.88
HMGCS2P54868 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HMGCS2P54868 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
HMGCS2P54868 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGCS2P54868 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGCS2P54868 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.52■□□□□ 0.88
HMGCS2P54868 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.52■□□□□ 0.88
HMGCS2P54868 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 AL096828.2-201ENST00000567259 1965 ntBASIC20.52■□□□□ 0.88
HMGCS2P54868 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HMGCS2P54868 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 AC211486.1-202ENST00000416371 468 ntBASIC20.52■□□□□ 0.88
HMGCS2P54868 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGCS2P54868 AC211476.1-201ENST00000503899 468 ntBASIC20.52■□□□□ 0.88
HMGCS2P54868 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.52■□□□□ 0.88
HMGCS2P54868 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGCS2P54868 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.52■□□□□ 0.88
HMGCS2P54868 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGCS2P54868 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGCS2P54868 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
HMGCS2P54868 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HMGCS2P54868 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
HMGCS2P54868 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HMGCS2P54868 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HMGCS2P54868 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
HMGCS2P54868 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 KLF4P1-201ENST00000412782 1185 ntBASIC20.51■□□□□ 0.87
HMGCS2P54868 MCCD1P2-201ENST00000423228 335 ntBASIC20.51■□□□□ 0.87
HMGCS2P54868 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGCS2P54868 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.51■□□□□ 0.87
HMGCS2P54868 AC108073.2-201ENST00000464002 357 ntBASIC20.51■□□□□ 0.87
HMGCS2P54868 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.51■□□□□ 0.87
HMGCS2P54868 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGCS2P54868 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.51■□□□□ 0.87
HMGCS2P54868 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.51■□□□□ 0.87
HMGCS2P54868 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGCS2P54868 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGCS2P54868 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.51■□□□□ 0.87
HMGCS2P54868 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms