Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LIG3P49916 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.82■□□□□ 0.6
LIG3P49916 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.82■□□□□ 0.6
LIG3P49916 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 AC009947.2-201ENST00000444014 672 ntBASIC18.82■□□□□ 0.6
LIG3P49916 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.82■□□□□ 0.6
LIG3P49916 YBX1P2-201ENST00000489612 999 ntBASIC18.82■□□□□ 0.6
LIG3P49916 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.82■□□□□ 0.6
LIG3P49916 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.82■□□□□ 0.6
LIG3P49916 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.82■□□□□ 0.6
LIG3P49916 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 AL590326.2-201ENST00000625139 305 ntBASIC18.82■□□□□ 0.6
LIG3P49916 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.82■□□□□ 0.6
LIG3P49916 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIG3P49916 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
LIG3P49916 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.82■□□□□ 0.6
LIG3P49916 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
LIG3P49916 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG3P49916 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 MCCD1P1-208ENST00000445732 328 ntBASIC18.81■□□□□ 0.6
LIG3P49916 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.81■□□□□ 0.6
LIG3P49916 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG3P49916 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG3P49916 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.81■□□□□ 0.6
LIG3P49916 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 AC011558.1-201ENST00000623459 338 ntBASIC18.81■□□□□ 0.6
LIG3P49916 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LIG3P49916 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIG3P49916 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.81■□□□□ 0.6
LIG3P49916 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG3P49916 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG3P49916 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG3P49916 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG3P49916 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LIG3P49916 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG3P49916 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG3P49916 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LIG3P49916 AL445228.2-201ENST00000605589 952 ntBASIC18.8■□□□□ 0.6
LIG3P49916 AC140113.3-201ENST00000605663 199 ntBASIC18.8■□□□□ 0.6
LIG3P49916 AL023973.1-201ENST00000624619 620 ntBASIC18.8■□□□□ 0.6
LIG3P49916 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG3P49916 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
LIG3P49916 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.8■□□□□ 0.6
LIG3P49916 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.8■□□□□ 0.6
LIG3P49916 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.8■□□□□ 0.6
LIG3P49916 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG3P49916 AL513477.1-201ENST00000602865 2407 ntBASIC18.8■□□□□ 0.6
LIG3P49916 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG3P49916 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIG3P49916 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
LIG3P49916 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.79■□□□□ 0.6
LIG3P49916 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.79■□□□□ 0.6
LIG3P49916 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.79■□□□□ 0.6
LIG3P49916 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.79■□□□□ 0.6
LIG3P49916 RNF152P1-201ENST00000397754 604 ntBASIC18.79■□□□□ 0.6
LIG3P49916 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms