Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CXCL12P48061 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.71■□□□□ 0.43
CXCL12P48061 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 IGLL3P-201ENST00000412472 434 ntBASIC17.71■□□□□ 0.43
CXCL12P48061 KLF4P1-201ENST00000412782 1185 ntBASIC17.71■□□□□ 0.43
CXCL12P48061 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.71■□□□□ 0.43
CXCL12P48061 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.71■□□□□ 0.43
CXCL12P48061 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.71■□□□□ 0.43
CXCL12P48061 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.71■□□□□ 0.43
CXCL12P48061 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.71■□□□□ 0.43
CXCL12P48061 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.71■□□□□ 0.43
CXCL12P48061 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 AC148477.5-201ENST00000625164 1645 ntBASIC17.71■□□□□ 0.43
CXCL12P48061 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL12P48061 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CXCL12P48061 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CXCL12P48061 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CXCL12P48061 ESPNP-201ENST00000270691 2015 ntBASIC17.71■□□□□ 0.42
CXCL12P48061 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CXCL12P48061 AL049757.1-201ENST00000616842 1596 ntBASIC17.7■□□□□ 0.42
CXCL12P48061 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CXCL12P48061 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.7■□□□□ 0.42
CXCL12P48061 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CXCL12P48061 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
CXCL12P48061 AC003669.1-201ENST00000334569 611 ntBASIC17.7■□□□□ 0.42
CXCL12P48061 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CXCL12P48061 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.7■□□□□ 0.42
CXCL12P48061 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 FAM58CP-201ENST00000435741 640 ntBASIC17.7■□□□□ 0.42
CXCL12P48061 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.7■□□□□ 0.42
CXCL12P48061 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.7■□□□□ 0.42
CXCL12P48061 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.7■□□□□ 0.42
CXCL12P48061 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.7■□□□□ 0.42
CXCL12P48061 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CXCL12P48061 KRT19P2-202ENST00000557173 1012 ntBASIC17.7■□□□□ 0.42
CXCL12P48061 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CXCL12P48061 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CXCL12P48061 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CXCL12P48061 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.7■□□□□ 0.42
CXCL12P48061 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.7■□□□□ 0.42
CXCL12P48061 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CXCL12P48061 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL12P48061 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 COX20P2-201ENST00000452636 358 ntBASIC17.69■□□□□ 0.42
CXCL12P48061 AC074386.1-202ENST00000463561 864 ntBASIC17.69■□□□□ 0.42
CXCL12P48061 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.69■□□□□ 0.42
CXCL12P48061 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.69■□□□□ 0.42
CXCL12P48061 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.69■□□□□ 0.42
CXCL12P48061 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.69■□□□□ 0.42
CXCL12P48061 AC239800.4-201ENST00000603712 296 ntBASIC17.69■□□□□ 0.42
CXCL12P48061 GGTLC5P-201ENST00000617623 998 ntBASIC17.69■□□□□ 0.42
CXCL12P48061 AC010507.1-201ENST00000633895 436 ntBASIC17.69■□□□□ 0.42
CXCL12P48061 AL805961.1-202ENST00000641562 540 ntBASIC17.69■□□□□ 0.42
CXCL12P48061 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL12P48061 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.69■□□□□ 0.42
CXCL12P48061 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CXCL12P48061 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CXCL12P48061 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CXCL12P48061 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms