Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SOX3P41225 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 KRT8P26-201ENST00000534154 1276 ntBASIC16.84■□□□□ 0.29
SOX3P41225 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.84■□□□□ 0.29
SOX3P41225 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX3P41225 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 AC016734.2-201ENST00000624325 1377 ntBASIC16.84■□□□□ 0.29
SOX3P41225 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 GNAS-203ENST00000306120 1878 ntBASIC16.84■□□□□ 0.29
SOX3P41225 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SOX3P41225 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX3P41225 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SOX3P41225 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.84■□□□□ 0.29
SOX3P41225 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX3P41225 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.84■□□□□ 0.29
SOX3P41225 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX3P41225 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SOX3P41225 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
SOX3P41225 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.29
SOX3P41225 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
SOX3P41225 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
SOX3P41225 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 HCG4P8-203ENST00000443049 980 ntBASIC16.83■□□□□ 0.28
SOX3P41225 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.83■□□□□ 0.28
SOX3P41225 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 TSSC2-201ENST00000450217 709 ntBASIC16.83■□□□□ 0.28
SOX3P41225 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.83■□□□□ 0.28
SOX3P41225 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SOX3P41225 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.83■□□□□ 0.28
SOX3P41225 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX3P41225 AC135776.1-201ENST00000319817 2481 ntBASIC16.82■□□□□ 0.28
SOX3P41225 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX3P41225 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX3P41225 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX3P41225 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX3P41225 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SOX3P41225 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SOX3P41225 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX3P41225 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.28
SOX3P41225 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.82■□□□□ 0.28
SOX3P41225 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SOX3P41225 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 IGHGP-201ENST00000390555 1178 ntBASIC16.82■□□□□ 0.28
SOX3P41225 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX3P41225 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX3P41225 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX3P41225 GPR32P1-201ENST00000601788 811 ntBASIC16.82■□□□□ 0.28
SOX3P41225 AL390719.2-201ENST00000606993 987 ntBASIC16.82■□□□□ 0.28
SOX3P41225 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX3P41225 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX3P41225 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SOX3P41225 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 KRT89P-201ENST00000620027 1478 ntBASIC16.81■□□□□ 0.28
SOX3P41225 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 ATP5G2P1-201ENST00000433580 426 ntBASIC16.81■□□□□ 0.28
SOX3P41225 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.81■□□□□ 0.28
SOX3P41225 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms