Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN4AP35499 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SCN4AP35499 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SCN4AP35499 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN4AP35499 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN4AP35499 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN4AP35499 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SCN4AP35499 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN4AP35499 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN4AP35499 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
SCN4AP35499 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
SCN4AP35499 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.95■□□□□ 0.94
SCN4AP35499 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN4AP35499 GPS2P2-201ENST00000430745 888 ntBASIC20.95■□□□□ 0.94
SCN4AP35499 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN4AP35499 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.95■□□□□ 0.94
SCN4AP35499 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN4AP35499 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SCN4AP35499 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN4AP35499 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.95■□□□□ 0.94
SCN4AP35499 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SCN4AP35499 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.95■□□□□ 0.94
SCN4AP35499 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN4AP35499 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN4AP35499 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.95■□□□□ 0.94
SCN4AP35499 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.94■□□□□ 0.94
SCN4AP35499 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN4AP35499 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SCN4AP35499 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.94■□□□□ 0.94
SCN4AP35499 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN4AP35499 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.94■□□□□ 0.94
SCN4AP35499 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SCN4AP35499 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN4AP35499 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SCN4AP35499 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC20.94■□□□□ 0.94
SCN4AP35499 AL512356.2-201ENST00000546955 174 ntBASIC20.94■□□□□ 0.94
SCN4AP35499 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC20.94■□□□□ 0.94
SCN4AP35499 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN4AP35499 AL390754.1-201ENST00000619088 582 ntBASIC20.94■□□□□ 0.94
SCN4AP35499 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN4AP35499 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN4AP35499 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SCN4AP35499 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN4AP35499 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 AC009336.1-201ENST00000608941 1553 ntBASIC20.93■□□□□ 0.94
SCN4AP35499 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.93■□□□□ 0.94
SCN4AP35499 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN4AP35499 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC20.93■□□□□ 0.94
SCN4AP35499 AL008721.1-201ENST00000609964 604 ntBASIC20.93■□□□□ 0.94
SCN4AP35499 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN4AP35499 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 TUBB3P1-201ENST00000405796 1332 ntBASIC20.93■□□□□ 0.94
SCN4AP35499 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
SCN4AP35499 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN4AP35499 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN4AP35499 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 AC140658.5-201ENST00000438532 169 ntBASIC20.92■□□□□ 0.94
SCN4AP35499 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.92■□□□□ 0.94
SCN4AP35499 AL135744.1-201ENST00000565098 629 ntBASIC20.92■□□□□ 0.94
SCN4AP35499 AC109462.3-201ENST00000573934 613 ntBASIC20.92■□□□□ 0.94
SCN4AP35499 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms