Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 REXO1L11P-201ENST00000620964 1927 ntBASIC20.18■□□□□ 0.82
COL11A1P12107 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 HCG4B-203ENST00000450128 991 ntBASIC20.18■□□□□ 0.82
COL11A1P12107 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.18■□□□□ 0.82
COL11A1P12107 AL589182.2-201ENST00000619332 1049 ntBASIC20.18■□□□□ 0.82
COL11A1P12107 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.18■□□□□ 0.82
COL11A1P12107 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 REXO1L9P-201ENST00000604264 2108 ntBASIC20.18■□□□□ 0.82
COL11A1P12107 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
COL11A1P12107 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
COL11A1P12107 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.17■□□□□ 0.82
COL11A1P12107 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.17■□□□□ 0.82
COL11A1P12107 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.17■□□□□ 0.82
COL11A1P12107 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.17■□□□□ 0.82
COL11A1P12107 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.17■□□□□ 0.82
COL11A1P12107 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.17■□□□□ 0.82
COL11A1P12107 AL691403.2-201ENST00000618460 490 ntBASIC20.17■□□□□ 0.82
COL11A1P12107 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.17■□□□□ 0.82
COL11A1P12107 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.17■□□□□ 0.82
COL11A1P12107 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL11A1P12107 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
COL11A1P12107 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL11A1P12107 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.16■□□□□ 0.82
COL11A1P12107 DNAJB3-201ENST00000446806 729 ntBASIC20.16■□□□□ 0.82
COL11A1P12107 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC008667.4-201ENST00000607370 168 ntBASIC20.16■□□□□ 0.82
COL11A1P12107 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC004706.3-202ENST00000621574 984 ntBASIC20.16■□□□□ 0.82
COL11A1P12107 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.16■□□□□ 0.82
COL11A1P12107 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.16■□□□□ 0.82
COL11A1P12107 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.16■□□□□ 0.82
COL11A1P12107 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.16■□□□□ 0.82
COL11A1P12107 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.16■□□□□ 0.82
COL11A1P12107 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.16■□□□□ 0.82
COL11A1P12107 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC003669.1-201ENST00000334569 611 ntBASIC20.16■□□□□ 0.82
COL11A1P12107 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL11A1P12107 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.16■□□□□ 0.82
COL11A1P12107 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.16■□□□□ 0.82
COL11A1P12107 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.16■□□□□ 0.82
COL11A1P12107 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.15■□□□□ 0.82
COL11A1P12107 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
COL11A1P12107 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
COL11A1P12107 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.15■□□□□ 0.82
COL11A1P12107 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.15■□□□□ 0.82
COL11A1P12107 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
COL11A1P12107 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
COL11A1P12107 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 BX323043.1-201ENST00000641006 1765 ntBASIC20.15■□□□□ 0.82
COL11A1P12107 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 AC092183.1-201ENST00000469884 875 ntBASIC20.15■□□□□ 0.82
COL11A1P12107 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.15■□□□□ 0.82
COL11A1P12107 MIR4751-201ENST00000578027 74 ntBASIC20.15■□□□□ 0.82
COL11A1P12107 AP001160.2-201ENST00000596071 487 ntBASIC20.15■□□□□ 0.82
COL11A1P12107 AL139424.1-201ENST00000607572 797 ntBASIC20.15■□□□□ 0.82
COL11A1P12107 AC092865.6-201ENST00000642101 219 ntBASIC20.15■□□□□ 0.82
COL11A1P12107 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms