Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13.9□□□□□ -0.18
CXCL1P09341 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CXCL1P09341 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CXCL1P09341 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CXCL1P09341 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
CXCL1P09341 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.9□□□□□ -0.19
CXCL1P09341 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CXCL1P09341 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.19
CXCL1P09341 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.89□□□□□ -0.19
CXCL1P09341 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CXCL1P09341 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.89□□□□□ -0.19
CXCL1P09341 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CXCL1P09341 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.89□□□□□ -0.19
CXCL1P09341 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC13.89□□□□□ -0.19
CXCL1P09341 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CXCL1P09341 AF201337.1-201ENST00000520239 748 ntBASIC13.89□□□□□ -0.19
CXCL1P09341 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC13.89□□□□□ -0.19
CXCL1P09341 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC13.89□□□□□ -0.19
CXCL1P09341 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC13.89□□□□□ -0.19
CXCL1P09341 AC006557.6-201ENST00000623071 864 ntBASIC13.89□□□□□ -0.19
CXCL1P09341 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC13.89□□□□□ -0.19
CXCL1P09341 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.89□□□□□ -0.19
CXCL1P09341 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.89□□□□□ -0.19
CXCL1P09341 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CXCL1P09341 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CXCL1P09341 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.89□□□□□ -0.19
CXCL1P09341 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 KRT8P45-201ENST00000414328 1447 ntBASIC13.89□□□□□ -0.19
CXCL1P09341 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CXCL1P09341 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CXCL1P09341 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CXCL1P09341 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CXCL1P09341 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CXCL1P09341 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CXCL1P09341 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CXCL1P09341 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.87□□□□□ -0.19
CXCL1P09341 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CXCL1P09341 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CXCL1P09341 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 TSPY23P-201ENST00000440136 739 ntBASIC13.87□□□□□ -0.19
CXCL1P09341 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms