Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC21.72■■□□□ 1.07
COL4A1P02462 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
COL4A1P02462 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC21.72■■□□□ 1.07
COL4A1P02462 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.72■■□□□ 1.07
COL4A1P02462 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.72■■□□□ 1.07
COL4A1P02462 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC21.72■■□□□ 1.07
COL4A1P02462 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC21.72■■□□□ 1.07
COL4A1P02462 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC21.72■■□□□ 1.07
COL4A1P02462 AL589182.2-201ENST00000619332 1049 ntBASIC21.72■■□□□ 1.07
COL4A1P02462 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
COL4A1P02462 AP000997.3-201ENST00000623333 2250 ntBASIC21.72■■□□□ 1.07
COL4A1P02462 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 PC-208ENST00000529047 1607 ntTSL 3 BASIC21.72■■□□□ 1.07
COL4A1P02462 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.72■■□□□ 1.07
COL4A1P02462 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL4A1P02462 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
COL4A1P02462 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
COL4A1P02462 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A1P02462 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC21.72■■□□□ 1.07
COL4A1P02462 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
COL4A1P02462 AC103564.2-201ENST00000432853 1299 ntBASIC21.72■■□□□ 1.07
COL4A1P02462 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
COL4A1P02462 AC010507.1-201ENST00000633895 436 ntBASIC21.72■■□□□ 1.07
COL4A1P02462 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A1P02462 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.71■■□□□ 1.07
COL4A1P02462 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A1P02462 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL4A1P02462 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.71■■□□□ 1.07
COL4A1P02462 REXO1L9P-201ENST00000604264 2108 ntBASIC21.71■■□□□ 1.07
COL4A1P02462 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
COL4A1P02462 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A1P02462 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A1P02462 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.71■■□□□ 1.07
COL4A1P02462 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A1P02462 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.71■■□□□ 1.07
COL4A1P02462 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL4A1P02462 GID4-202ENST00000376345 1391 ntTSL 3 BASIC21.7■■□□□ 1.07
COL4A1P02462 AC018445.3-201ENST00000624177 1945 ntBASIC21.7■■□□□ 1.07
COL4A1P02462 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A1P02462 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A1P02462 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A1P02462 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.7■■□□□ 1.06
COL4A1P02462 HTR5BP-201ENST00000430851 1154 ntBASIC21.7■■□□□ 1.06
COL4A1P02462 RPS15P9-201ENST00000494093 319 ntBASIC21.7■■□□□ 1.06
COL4A1P02462 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.7■■□□□ 1.06
COL4A1P02462 COX5A-206ENST00000568783 571 ntTSL 3 BASIC21.7■■□□□ 1.06
COL4A1P02462 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21.7■■□□□ 1.06
COL4A1P02462 STK25P1-201ENST00000585406 838 ntBASIC21.7■■□□□ 1.06
COL4A1P02462 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.7■■□□□ 1.06
COL4A1P02462 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
COL4A1P02462 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A1P02462 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A1P02462 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A1P02462 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL4A1P02462 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC21.69■■□□□ 1.06
COL4A1P02462 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
COL4A1P02462 HNRNPA1P28-201ENST00000424481 961 ntBASIC21.69■■□□□ 1.06
COL4A1P02462 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL4A1P02462 OR7E47P-204ENST00000575924 449 ntBASIC21.69■■□□□ 1.06
COL4A1P02462 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.69■■□□□ 1.06
COL4A1P02462 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.69■■□□□ 1.06
COL4A1P02462 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC21.69■■□□□ 1.06
COL4A1P02462 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 AC008667.4-201ENST00000607370 168 ntBASIC21.69■■□□□ 1.06
COL4A1P02462 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.69■■□□□ 1.06
COL4A1P02462 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.69■■□□□ 1.06
COL4A1P02462 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A1P02462 AP006288.1-201ENST00000446065 395 ntBASIC21.69■■□□□ 1.06
COL4A1P02462 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.69■■□□□ 1.06
COL4A1P02462 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
COL4A1P02462 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A1P02462 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A1P02462 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.68■■□□□ 1.06
COL4A1P02462 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.68■■□□□ 1.06
COL4A1P02462 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
COL4A1P02462 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.68■■□□□ 1.06
COL4A1P02462 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms