Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX3O95343 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX3O95343 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SIX3O95343 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SIX3O95343 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.49■□□□□ 0.39
SIX3O95343 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.49■□□□□ 0.39
SIX3O95343 AC113404.2-201ENST00000507884 177 ntBASIC17.49■□□□□ 0.39
SIX3O95343 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.49■□□□□ 0.39
SIX3O95343 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX3O95343 AC024563.2-201ENST00000603282 481 ntBASIC17.49■□□□□ 0.39
SIX3O95343 AC140113.3-201ENST00000605663 199 ntBASIC17.49■□□□□ 0.39
SIX3O95343 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SIX3O95343 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX3O95343 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX3O95343 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SIX3O95343 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.49■□□□□ 0.39
SIX3O95343 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 AL391807.1-203ENST00000604392 2365 ntBASIC17.48■□□□□ 0.39
SIX3O95343 AC133963.1-201ENST00000504166 1679 ntBASIC17.48■□□□□ 0.39
SIX3O95343 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SIX3O95343 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.48■□□□□ 0.39
SIX3O95343 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
SIX3O95343 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX3O95343 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.48■□□□□ 0.39
SIX3O95343 SPDYE15P-201ENST00000424157 909 ntBASIC17.48■□□□□ 0.39
SIX3O95343 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.48■□□□□ 0.39
SIX3O95343 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.48■□□□□ 0.39
SIX3O95343 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX3O95343 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SIX3O95343 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SIX3O95343 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.48■□□□□ 0.39
SIX3O95343 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SIX3O95343 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX3O95343 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SIX3O95343 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX3O95343 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.47■□□□□ 0.39
SIX3O95343 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 PCDHA12-202ENST00000613593 2588 ntBASIC17.47■□□□□ 0.39
SIX3O95343 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 LIN28AP1-201ENST00000429574 405 ntBASIC17.47■□□□□ 0.39
SIX3O95343 ATP5G1P1-201ENST00000448724 379 ntBASIC17.47■□□□□ 0.39
SIX3O95343 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.47■□□□□ 0.39
SIX3O95343 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.47■□□□□ 0.39
SIX3O95343 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.47■□□□□ 0.39
SIX3O95343 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.47■□□□□ 0.39
SIX3O95343 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 AL136038.4-201ENST00000603606 1261 ntBASIC17.47■□□□□ 0.39
SIX3O95343 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 SIRPAP1-201ENST00000448467 1770 ntBASIC17.47■□□□□ 0.39
SIX3O95343 LINC00304-203ENST00000565008 1864 ntBASIC17.47■□□□□ 0.39
SIX3O95343 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.47■□□□□ 0.39
SIX3O95343 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX3O95343 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX3O95343 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX3O95343 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
SIX3O95343 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX3O95343 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms