Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
PCF11O94913 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC27.7■■■□□ 2.02
PCF11O94913 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC27.69■■■□□ 2.02
PCF11O94913 KRT18P3-201ENST00000451602 1288 ntBASIC27.69■■■□□ 2.02
PCF11O94913 ARTN-206ENST00000472435 402 ntTSL 3 BASIC27.69■■■□□ 2.02
PCF11O94913 AC040169.1-201ENST00000565382 521 ntBASIC27.69■■■□□ 2.02
PCF11O94913 AL589182.2-201ENST00000619332 1049 ntBASIC27.69■■■□□ 2.02
PCF11O94913 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC27.69■■■□□ 2.02
PCF11O94913 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC27.69■■■□□ 2.02
PCF11O94913 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 PRYP5-201ENST00000451909 266 ntBASIC27.69■■■□□ 2.02
PCF11O94913 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
PCF11O94913 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC27.69■■■□□ 2.02
PCF11O94913 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC27.69■■■□□ 2.02
PCF11O94913 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC27.69■■■□□ 2.02
PCF11O94913 AL805961.1-202ENST00000641562 540 ntBASIC27.69■■■□□ 2.02
PCF11O94913 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC27.68■■■□□ 2.02
PCF11O94913 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
PCF11O94913 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC27.68■■■□□ 2.02
PCF11O94913 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
PCF11O94913 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC27.68■■■□□ 2.02
PCF11O94913 AC009336.1-201ENST00000608941 1553 ntBASIC27.68■■■□□ 2.02
PCF11O94913 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC27.68■■■□□ 2.02
PCF11O94913 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC27.68■■■□□ 2.02
PCF11O94913 REXO1L9P-201ENST00000604264 2108 ntBASIC27.68■■■□□ 2.02
PCF11O94913 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC27.68■■■□□ 2.02
PCF11O94913 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC27.68■■■□□ 2.02
PCF11O94913 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC27.68■■■□□ 2.02
PCF11O94913 RNA5SP416-201ENST00000516838 111 ntBASIC27.68■■■□□ 2.02
PCF11O94913 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC27.68■■■□□ 2.02
PCF11O94913 GID4-202ENST00000376345 1391 ntTSL 3 BASIC27.68■■■□□ 2.02
PCF11O94913 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC27.68■■■□□ 2.02
PCF11O94913 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
PCF11O94913 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC27.67■■■□□ 2.02
PCF11O94913 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC27.67■■■□□ 2.02
PCF11O94913 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
PCF11O94913 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
PCF11O94913 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
PCF11O94913 AC004832.2-201ENST00000426397 482 ntBASIC27.67■■■□□ 2.02
PCF11O94913 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC27.67■■■□□ 2.02
PCF11O94913 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
PCF11O94913 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC27.67■■■□□ 2.02
PCF11O94913 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC27.67■■■□□ 2.02
PCF11O94913 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
PCF11O94913 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
PCF11O94913 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
PCF11O94913 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
PCF11O94913 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
PCF11O94913 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
PCF11O94913 DNAJB3-201ENST00000446806 729 ntBASIC27.66■■■□□ 2.02
PCF11O94913 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
PCF11O94913 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC27.66■■■□□ 2.02
PCF11O94913 EFTUD1P1-204ENST00000560401 1798 ntBASIC27.66■■■□□ 2.02
PCF11O94913 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
PCF11O94913 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
PCF11O94913 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC27.66■■■□□ 2.02
PCF11O94913 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
PCF11O94913 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
PCF11O94913 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC27.65■■■□□ 2.02
PCF11O94913 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC27.65■■■□□ 2.02
PCF11O94913 BEX3-201ENST00000361298 921 ntTSL 2 BASIC27.65■■■□□ 2.02
PCF11O94913 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC27.65■■■□□ 2.02
PCF11O94913 NKTR-203ENST00000442970 646 ntTSL 2 BASIC27.65■■■□□ 2.02
PCF11O94913 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC27.65■■■□□ 2.02
PCF11O94913 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCF11O94913 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
PCF11O94913 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCF11O94913 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCF11O94913 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
PCF11O94913 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC27.65■■■□□ 2.02
PCF11O94913 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
PCF11O94913 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCF11O94913 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC27.65■■■□□ 2.02
PCF11O94913 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
PCF11O94913 IMP4-203ENST00000409935 958 ntTSL 5 BASIC27.65■■■□□ 2.02
PCF11O94913 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC27.65■■■□□ 2.02
PCF11O94913 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC27.64■■■□□ 2.02
PCF11O94913 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
PCF11O94913 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
PCF11O94913 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
PCF11O94913 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.02
PCF11O94913 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
PCF11O94913 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC27.64■■■□□ 2.02
PCF11O94913 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCF11O94913 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC27.64■■■□□ 2.01
PCF11O94913 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC27.64■■■□□ 2.01
PCF11O94913 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCF11O94913 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCF11O94913 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCF11O94913 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCF11O94913 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCF11O94913 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC27.64■■■□□ 2.01
PCF11O94913 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC27.64■■■□□ 2.01
PCF11O94913 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC27.64■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms