Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 MIR4674-201ENST00000582457 87 ntBASIC20.81■□□□□ 0.92
PRPF40AO75400 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.81■□□□□ 0.92
PRPF40AO75400 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.81■□□□□ 0.92
PRPF40AO75400 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PRPF40AO75400 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PRPF40AO75400 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRPF40AO75400 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.81■□□□□ 0.92
PRPF40AO75400 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRPF40AO75400 AL024508.2-201ENST00000607749 1894 ntBASIC20.81■□□□□ 0.92
PRPF40AO75400 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRPF40AO75400 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
PRPF40AO75400 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PRPF40AO75400 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRPF40AO75400 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRPF40AO75400 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.8■□□□□ 0.92
PRPF40AO75400 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PRPF40AO75400 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.8■□□□□ 0.92
PRPF40AO75400 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
PRPF40AO75400 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.8■□□□□ 0.92
PRPF40AO75400 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRPF40AO75400 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.8■□□□□ 0.92
PRPF40AO75400 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.79■□□□□ 0.92
PRPF40AO75400 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PRPF40AO75400 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
PRPF40AO75400 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
PRPF40AO75400 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.79■□□□□ 0.92
PRPF40AO75400 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.79■□□□□ 0.92
PRPF40AO75400 TSPY15P-201ENST00000457163 923 ntBASIC20.79■□□□□ 0.92
PRPF40AO75400 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.79■□□□□ 0.92
PRPF40AO75400 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.79■□□□□ 0.92
PRPF40AO75400 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 AC073912.3-201ENST00000624414 853 ntBASIC20.79■□□□□ 0.92
PRPF40AO75400 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.79■□□□□ 0.92
PRPF40AO75400 AC096733.2-201ENST00000609937 1394 ntBASIC20.79■□□□□ 0.92
PRPF40AO75400 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRPF40AO75400 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.79■□□□□ 0.92
PRPF40AO75400 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PRPF40AO75400 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
PRPF40AO75400 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.78■□□□□ 0.92
PRPF40AO75400 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PRPF40AO75400 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms