Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.08■□□□□ 0.32
PDLIM1O00151 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.08■□□□□ 0.32
PDLIM1O00151 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.08■□□□□ 0.32
PDLIM1O00151 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.08■□□□□ 0.32
PDLIM1O00151 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.08■□□□□ 0.32
PDLIM1O00151 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PDLIM1O00151 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM1O00151 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.08■□□□□ 0.32
PDLIM1O00151 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.07■□□□□ 0.32
PDLIM1O00151 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.07■□□□□ 0.32
PDLIM1O00151 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PDLIM1O00151 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.07■□□□□ 0.32
PDLIM1O00151 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PDLIM1O00151 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
PDLIM1O00151 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 AC004980.1-204ENST00000429707 299 ntBASIC17.07■□□□□ 0.32
PDLIM1O00151 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.07■□□□□ 0.32
PDLIM1O00151 AC026271.3-201ENST00000571884 352 ntBASIC17.07■□□□□ 0.32
PDLIM1O00151 MIR4785-201ENST00000585005 73 ntBASIC17.07■□□□□ 0.32
PDLIM1O00151 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PDLIM1O00151 CR392000.1-201ENST00000624770 1228 ntBASIC17.07■□□□□ 0.32
PDLIM1O00151 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
PDLIM1O00151 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
PDLIM1O00151 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PDLIM1O00151 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.07■□□□□ 0.32
PDLIM1O00151 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.07■□□□□ 0.32
PDLIM1O00151 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.07■□□□□ 0.32
PDLIM1O00151 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM1O00151 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
PDLIM1O00151 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 KRT8P11-201ENST00000409686 1436 ntBASIC17.06■□□□□ 0.32
PDLIM1O00151 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
PDLIM1O00151 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.06■□□□□ 0.32
PDLIM1O00151 NUDT16P1-203ENST00000513809 620 ntBASIC17.06■□□□□ 0.32
PDLIM1O00151 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.06■□□□□ 0.32
PDLIM1O00151 AC026471.5-201ENST00000615068 467 ntBASIC17.06■□□□□ 0.32
PDLIM1O00151 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.06■□□□□ 0.32
PDLIM1O00151 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.06■□□□□ 0.32
PDLIM1O00151 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.06■□□□□ 0.32
PDLIM1O00151 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PDLIM1O00151 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PDLIM1O00151 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM1O00151 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.05■□□□□ 0.32
PDLIM1O00151 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.05■□□□□ 0.32
PDLIM1O00151 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.05■□□□□ 0.32
PDLIM1O00151 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 CROCCP2-202ENST00000412962 2773 ntBASIC17.05■□□□□ 0.32
PDLIM1O00151 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.05■□□□□ 0.32
PDLIM1O00151 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.05■□□□□ 0.32
PDLIM1O00151 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.05■□□□□ 0.32
PDLIM1O00151 AC116562.2-201ENST00000507042 360 ntBASIC17.05■□□□□ 0.32
PDLIM1O00151 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms