Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 AL390955.1-201ENST00000428694 934 ntBASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 AC116562.4-202ENST00000641738 218 ntBASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 AC124067.4-201ENST00000519691 2379 ntBASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM49D1C9J1S8 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 AC011676.5-201ENST00000624864 2660 ntBASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 SEC1P-202ENST00000473944 940 ntBASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 AP000525.1-201ENST00000608286 694 ntBASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 LINC00167-201ENST00000530583 1419 ntBASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM49D1C9J1S8 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 Z99916.2-201ENST00000604037 246 ntBASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM49D1C9J1S8 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 HLA-J-201ENST00000462773 1622 ntBASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 FITM1-202ENST00000559294 800 ntBASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms