Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 AL136038.4-201ENST00000603606 1261 ntBASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.18■□□□□ 0.5
TCRBV7S3A2A0A539 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 AC034232.1-201ENST00000506026 1064 ntBASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 AC004263.2-201ENST00000617183 678 ntBASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV7S3A2A0A539 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 KRT18P65-201ENST00000439811 1286 ntBASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.16■□□□□ 0.5
TCRBV7S3A2A0A539 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 KRT89P-201ENST00000620027 1478 ntBASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms