Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 PRORSD1P-202ENST00000563365 2154 ntBASIC14.51□□□□□ -0.09
FOXA2Q9Y261 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 AL645608.8-201ENST00000606034 2086 ntBASIC14.51□□□□□ -0.09
FOXA2Q9Y261 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA2Q9Y261 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 LINC01238-205ENST00000567549 1107 ntBASIC14.5□□□□□ -0.09
FOXA2Q9Y261 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 AC006011.2-201ENST00000621313 1158 ntBASIC14.5□□□□□ -0.09
FOXA2Q9Y261 AC011558.1-201ENST00000623459 338 ntBASIC14.5□□□□□ -0.09
FOXA2Q9Y261 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA2Q9Y261 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 TSPY5P-201ENST00000426936 936 ntBASIC14.49□□□□□ -0.09
FOXA2Q9Y261 HOMER2P1-201ENST00000455653 964 ntBASIC14.49□□□□□ -0.09
FOXA2Q9Y261 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 AL441883.1-201ENST00000566170 1045 ntBASIC14.49□□□□□ -0.09
FOXA2Q9Y261 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 RBM42-202ENST00000586618 771 ntTSL 3 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 AC139713.2-201ENST00000641328 2723 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms