Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 PRELID1P1-202ENST00000567272 903 ntBASIC21.1■□□□□ 0.97
RNF41Q9H4P4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 CLEC4GP1-201ENST00000596555 870 ntBASIC21.1■□□□□ 0.97
RNF41Q9H4P4 AC099336.1-202ENST00000602961 463 ntBASIC21.1■□□□□ 0.97
RNF41Q9H4P4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF41Q9H4P4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 DDX43P3-201ENST00000441064 443 ntBASIC21.09■□□□□ 0.97
RNF41Q9H4P4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 BNIP3P18-201ENST00000593976 575 ntBASIC21.09■□□□□ 0.97
RNF41Q9H4P4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RNF41Q9H4P4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 NOC2LP1-202ENST00000452600 2235 ntBASIC21.08■□□□□ 0.97
RNF41Q9H4P4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.08■□□□□ 0.97
RNF41Q9H4P4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF41Q9H4P4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RNF41Q9H4P4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF41Q9H4P4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
RNF41Q9H4P4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF41Q9H4P4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF41Q9H4P4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.07■□□□□ 0.96
RNF41Q9H4P4 AC096582.2-201ENST00000510860 516 ntBASIC21.07■□□□□ 0.96
RNF41Q9H4P4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms