Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 NAPSB-206ENST00000562112 1266 ntBASIC13.44□□□□□ -0.26
LINC00477Q96M19 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 AC024243.1-201ENST00000609234 778 ntBASIC13.44□□□□□ -0.26
LINC00477Q96M19 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 FST-202ENST00000396947 2538 ntTSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 PRORSD1P-202ENST00000563365 2154 ntBASIC13.44□□□□□ -0.26
LINC00477Q96M19 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00477Q96M19 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC13.44□□□□□ -0.26
LINC00477Q96M19 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 HMGA1P5-201ENST00000412453 271 ntBASIC13.43□□□□□ -0.26
LINC00477Q96M19 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 AC009947.2-201ENST00000444014 672 ntBASIC13.43□□□□□ -0.26
LINC00477Q96M19 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 MIR3917-201ENST00000580971 93 ntBASIC13.43□□□□□ -0.26
LINC00477Q96M19 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 AC106820.2-201ENST00000563775 3264 ntBASIC13.43□□□□□ -0.26
LINC00477Q96M19 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00477Q96M19 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LINC00477Q96M19 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.42□□□□□ -0.26
LINC00477Q96M19 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.42□□□□□ -0.26
LINC00477Q96M19 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00477Q96M19 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC13.42□□□□□ -0.26
LINC00477Q96M19 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
LINC00477Q96M19 PVRIG2P-201ENST00000435460 978 ntBASIC13.42□□□□□ -0.26
LINC00477Q96M19 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC13.42□□□□□ -0.26
LINC00477Q96M19 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
LINC00477Q96M19 AL355075.4-201ENST00000554988 638 ntBASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms