Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC133963.1-201ENST00000504166 1679 ntBASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 NEK4P2-201ENST00000580004 1012 ntBASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 AL023806.1-201ENST00000603994 1649 ntBASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 CROCCP2-202ENST00000412962 2773 ntBASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.58■□□□□ 0.56
ATG4AQ8WYN0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 AP001094.4-201ENST00000579008 2176 ntBASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 ECEL1P3-201ENST00000427961 737 ntBASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 PVRIG2P-201ENST00000435460 978 ntBASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 AC009949.1-201ENST00000623048 1830 ntBASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ATG4AQ8WYN0 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 LINC00304-203ENST00000565008 1864 ntBASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
ATG4AQ8WYN0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms