Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 MIR7706-201ENST00000613747 67 ntBASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 FAM215A-202ENST00000632077 792 ntBASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 WIZP1-201ENST00000531444 2299 ntBASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDDC3Q8N4P3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 AC022898.2-201ENST00000616822 1312 ntBASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDDC3Q8N4P3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 AC098818.2-201ENST00000564925 2320 ntBASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 AC007967.3-201ENST00000434308 558 ntBASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 AL049840.3-201ENST00000602669 611 ntBASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 AC097374.2-201ENST00000618617 1306 ntBASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.91■□□□□ 0.46
HDDC3Q8N4P3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms