Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 LINC01568-207ENST00000641790 1380 ntBASIC18.3■□□□□ 0.52
CASC4Q6P4E1 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CASC4Q6P4E1 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 NEK4P2-201ENST00000580004 1012 ntBASIC18.29■□□□□ 0.52
CASC4Q6P4E1 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 AC006116.8-202ENST00000587620 1550 ntBASIC18.29■□□□□ 0.52
CASC4Q6P4E1 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CASC4Q6P4E1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 AP000523.1-201ENST00000398242 1049 ntBASIC18.28■□□□□ 0.52
CASC4Q6P4E1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 AC093827.2-201ENST00000512654 315 ntBASIC18.28■□□□□ 0.52
CASC4Q6P4E1 MIR3917-201ENST00000580971 93 ntBASIC18.28■□□□□ 0.52
CASC4Q6P4E1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CASC4Q6P4E1 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CASC4Q6P4E1 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms