Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 PCED1CP-201ENST00000419887 785 ntBASIC19.35■□□□□ 0.69
KRT39Q6A163 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
KRT39Q6A163 KRT18P35-201ENST00000510488 1269 ntBASIC19.35■□□□□ 0.69
KRT39Q6A163 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.35■□□□□ 0.69
KRT39Q6A163 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
KRT39Q6A163 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.35■□□□□ 0.69
KRT39Q6A163 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
KRT39Q6A163 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.35■□□□□ 0.69
KRT39Q6A163 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.35■□□□□ 0.69
KRT39Q6A163 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.35■□□□□ 0.69
KRT39Q6A163 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.35■□□□□ 0.69
KRT39Q6A163 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.35■□□□□ 0.69
KRT39Q6A163 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
KRT39Q6A163 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.34■□□□□ 0.69
KRT39Q6A163 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.34■□□□□ 0.69
KRT39Q6A163 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.34■□□□□ 0.69
KRT39Q6A163 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.34■□□□□ 0.69
KRT39Q6A163 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
KRT39Q6A163 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.34■□□□□ 0.69
KRT39Q6A163 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.34■□□□□ 0.69
KRT39Q6A163 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
KRT39Q6A163 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
KRT39Q6A163 RN7SL606P-201ENST00000472779 293 ntBASIC19.34■□□□□ 0.69
KRT39Q6A163 AC090616.6-201ENST00000582640 721 ntBASIC19.34■□□□□ 0.69
KRT39Q6A163 AC010331.1-201ENST00000611423 582 ntBASIC19.34■□□□□ 0.69
KRT39Q6A163 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
KRT39Q6A163 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
KRT39Q6A163 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
KRT39Q6A163 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
KRT39Q6A163 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
KRT39Q6A163 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
KRT39Q6A163 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
KRT39Q6A163 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.33■□□□□ 0.69
KRT39Q6A163 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.33■□□□□ 0.69
KRT39Q6A163 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.33■□□□□ 0.68
KRT39Q6A163 MIR1224-201ENST00000408193 85 ntBASIC19.33■□□□□ 0.68
KRT39Q6A163 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.33■□□□□ 0.68
KRT39Q6A163 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.33■□□□□ 0.68
KRT39Q6A163 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
KRT39Q6A163 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 AC009949.1-201ENST00000623048 1830 ntBASIC19.32■□□□□ 0.68
KRT39Q6A163 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
KRT39Q6A163 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
KRT39Q6A163 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 BX276092.5-203ENST00000456199 560 ntBASIC19.32■□□□□ 0.68
KRT39Q6A163 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
KRT39Q6A163 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.32■□□□□ 0.68
KRT39Q6A163 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.32■□□□□ 0.68
KRT39Q6A163 AL445228.2-201ENST00000605589 952 ntBASIC19.32■□□□□ 0.68
KRT39Q6A163 AL121672.3-201ENST00000608644 468 ntBASIC19.32■□□□□ 0.68
KRT39Q6A163 IGHV3-41-201ENST00000613121 348 ntBASIC19.32■□□□□ 0.68
KRT39Q6A163 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.32■□□□□ 0.68
KRT39Q6A163 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
KRT39Q6A163 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
KRT39Q6A163 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms