Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT40Q6A162 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 AL845331.1-201ENST00000424978 1190 ntBASIC20.76■□□□□ 0.91
KRT40Q6A162 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.76■□□□□ 0.91
KRT40Q6A162 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT40Q6A162 AC092119.3-201ENST00000612618 583 ntBASIC20.76■□□□□ 0.91
KRT40Q6A162 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.76■□□□□ 0.91
KRT40Q6A162 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
KRT40Q6A162 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.76■□□□□ 0.91
KRT40Q6A162 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
KRT40Q6A162 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT40Q6A162 LINC00896-202ENST00000609602 2128 ntBASIC20.75■□□□□ 0.91
KRT40Q6A162 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.75■□□□□ 0.91
KRT40Q6A162 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT40Q6A162 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.75■□□□□ 0.91
KRT40Q6A162 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT40Q6A162 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.75■□□□□ 0.91
KRT40Q6A162 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 IGHGP-201ENST00000390555 1178 ntBASIC20.75■□□□□ 0.91
KRT40Q6A162 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
KRT40Q6A162 ATP5G2P1-201ENST00000433580 426 ntBASIC20.75■□□□□ 0.91
KRT40Q6A162 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT40Q6A162 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT40Q6A162 AP003733.1-201ENST00000491725 852 ntBASIC20.75■□□□□ 0.91
KRT40Q6A162 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.75■□□□□ 0.91
KRT40Q6A162 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.75■□□□□ 0.91
KRT40Q6A162 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.75■□□□□ 0.91
KRT40Q6A162 ZNF444P1-201ENST00000559497 298 ntBASIC20.75■□□□□ 0.91
KRT40Q6A162 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.75■□□□□ 0.91
KRT40Q6A162 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT40Q6A162 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
KRT40Q6A162 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
KRT40Q6A162 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT40Q6A162 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.74■□□□□ 0.91
KRT40Q6A162 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.74■□□□□ 0.91
KRT40Q6A162 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 KRT18P65-201ENST00000439811 1286 ntBASIC20.74■□□□□ 0.91
KRT40Q6A162 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.74■□□□□ 0.91
KRT40Q6A162 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.74■□□□□ 0.91
KRT40Q6A162 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.74■□□□□ 0.91
KRT40Q6A162 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.74■□□□□ 0.91
KRT40Q6A162 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.74■□□□□ 0.91
KRT40Q6A162 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.74■□□□□ 0.91
KRT40Q6A162 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.74■□□□□ 0.91
KRT40Q6A162 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 AC022898.2-201ENST00000616822 1312 ntBASIC20.74■□□□□ 0.91
KRT40Q6A162 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
KRT40Q6A162 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
KRT40Q6A162 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
KRT40Q6A162 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.73■□□□□ 0.91
KRT40Q6A162 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
KRT40Q6A162 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
KRT40Q6A162 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.73■□□□□ 0.91
KRT40Q6A162 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.73■□□□□ 0.91
KRT40Q6A162 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.73■□□□□ 0.91
KRT40Q6A162 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.73■□□□□ 0.91
KRT40Q6A162 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.73■□□□□ 0.91
KRT40Q6A162 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.73■□□□□ 0.91
KRT40Q6A162 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT40Q6A162 GPALPP1-207ENST00000611650 899 ntBASIC20.73■□□□□ 0.91
KRT40Q6A162 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
KRT40Q6A162 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.73■□□□□ 0.91
KRT40Q6A162 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms